Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311A10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0417 - 2972877-2973876,2973946-2974851,2975823-2976616,297...    28   4.0  
09_02_0469 - 9610883-9611338,9611749-9611871,9612199-9612375,961...    27   9.1  

>06_01_0417 -
           2972877-2973876,2973946-2974851,2975823-2976616,
           2977887-2977977,2978305-2978384
          Length = 956

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 293 KLNCTTTFLRNFAYIQVSNDKIHINLLRKIHEFVEKSSFC 174
           +L C   FLRN    Q+ +D++ I  ++++ E    S  C
Sbjct: 69  ELECMNAFLRNLTISQIHDDQVRI-WMKQVREIAYDSEDC 107


>09_02_0469 -
           9610883-9611338,9611749-9611871,9612199-9612375,
           9614416-9614501,9615519-9615678,9616122-9617438,
           9619463-9620428,9621452-9621766
          Length = 1199

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 411 IANFLICIATLIGCLRDQNAELIHSRNSEANDQILEVR*KVEL 283
           + +F +   +   C R + AE + SRNSE ++   E   ++EL
Sbjct: 796 VQSFSLSTRSSQSCQRSEKAEQVRSRNSEISEITYEEPAEIEL 838


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,968,060
Number of Sequences: 37544
Number of extensions: 212707
Number of successful extensions: 561
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)