Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311A10f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59189| Best HMM Match : Choline_kin_N (HMM E-Value=2.8)             30   1.3  
SB_51101| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_42359| Best HMM Match : Choline_kin_N (HMM E-Value=2.8)             30   1.3  
SB_25314| Best HMM Match : Choline_kin_N (HMM E-Value=2.8)             30   1.3  
SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)          30   1.3  
SB_9521| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.3  
SB_6955| Best HMM Match : Borrelia_orfA (HMM E-Value=2.1)              30   1.3  
SB_2310| Best HMM Match : Borrelia_orfA (HMM E-Value=1.6)              30   1.3  
SB_48523| Best HMM Match : Choline_kin_N (HMM E-Value=2.8)             30   1.3  
SB_42064| Best HMM Match : Queuosine_synth (HMM E-Value=2.4)           30   1.3  
SB_40921| Best HMM Match : Choline_kin_N (HMM E-Value=2.8)             30   1.3  
SB_27266| Best HMM Match : GBP_C (HMM E-Value=1.4)                     30   1.3  
SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13)                 30   1.3  
SB_16936| Best HMM Match : Borrelia_orfA (HMM E-Value=2.2)             30   1.3  
SB_9961| Best HMM Match : Borrelia_orfA (HMM E-Value=2.3)              30   1.3  
SB_9498| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.3  
SB_23039| Best HMM Match : rve (HMM E-Value=2.8e-20)                   29   3.1  
SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)               27   7.1  

>SB_59189| Best HMM Match : Choline_kin_N (HMM E-Value=2.8)
          Length = 532

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 221 NLLRKIHEFVEKSSFCCFL*ARRFLPLPTCSPHYSKSLFKNYHSSKQA 78
           N+L+++     KS+ CC +  +++         YSK  FK+Y SS +A
Sbjct: 372 NVLQQLISHKMKSTHCCDIALQQYKAFLADVERYSKEDFKSYQSSDKA 419


>SB_51101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 221  NLLRKIHEFVEKSSFCCFL*ARRFLPLPTCSPHYSKSLFKNYHSSKQA 78
            N+L+++     KS+ CC +  +++         YSK  FK+Y SS +A
Sbjct: 915  NVLQQLISHKMKSTHCCDIALQQYKAFLADVERYSKEDFKSYQSSDKA 962


>SB_42359| Best HMM Match : Choline_kin_N (HMM E-Value=2.8)
          Length = 285

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 221 NLLRKIHEFVEKSSFCCFL*ARRFLPLPTCSPHYSKSLFKNYHSSKQA 78
           N+L+++     KS+ CC +  +++         YSK  FK+Y SS +A
Sbjct: 207 NVLQQLISHKMKSTHCCDIALQQYKAFLADVERYSKEDFKSYQSSDKA 254


>SB_25314| Best HMM Match : Choline_kin_N (HMM E-Value=2.8)
          Length = 266

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 221 NLLRKIHEFVEKSSFCCFL*ARRFLPLPTCSPHYSKSLFKNYHSSKQA 78
           N+L+++     KS+ CC +  +++         YSK  FK+Y SS +A
Sbjct: 110 NVLQQLISHKMKSTHCCDIALQQYKAFLADVERYSKEDFKSYQSSDKA 157


>SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)
          Length = 919

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 221 NLLRKIHEFVEKSSFCCFL*ARRFLPLPTCSPHYSKSLFKNYHSSKQA 78
           N+L+++     KS+ CC +  +++         YSK  FK+Y SS +A
Sbjct: 683 NVLQQLISHKMKSTHCCDIALQQYKAFLADVERYSKEDFKSYQSSDKA 730


>SB_9521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 221 NLLRKIHEFVEKSSFCCFL*ARRFLPLPTCSPHYSKSLFKNYHSSKQA 78
           N+L+++     KS+ CC +  +++         YSK  FK+Y SS +A
Sbjct: 163 NVLQQLISHKMKSTHCCDIALQQYKAFLADVERYSKEDFKSYQSSDKA 210


>SB_6955| Best HMM Match : Borrelia_orfA (HMM E-Value=2.1)
          Length = 530

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 221 NLLRKIHEFVEKSSFCCFL*ARRFLPLPTCSPHYSKSLFKNYHSSKQA 78
           N+L+++     KS+ CC +  +++         YSK  FK+Y SS +A
Sbjct: 291 NVLQQLISHKMKSTHCCDIALQQYKAFLADVERYSKEDFKSYQSSDKA 338


>SB_2310| Best HMM Match : Borrelia_orfA (HMM E-Value=1.6)
          Length = 725

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 221 NLLRKIHEFVEKSSFCCFL*ARRFLPLPTCSPHYSKSLFKNYHSSKQA 78
           N+L+++     KS+ CC +  +++         YSK  FK+Y SS +A
Sbjct: 489 NVLQQLISHKMKSTHCCDIALQQYKAFLADVERYSKEDFKSYQSSDKA 536


>SB_48523| Best HMM Match : Choline_kin_N (HMM E-Value=2.8)
          Length = 443

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 221 NLLRKIHEFVEKSSFCCFL*ARRFLPLPTCSPHYSKSLFKNYHSSKQA 78
           N+L+++     KS+ CC +  +++         YSK  FK+Y SS +A
Sbjct: 351 NVLQQLISHKMKSTHCCDIALQQYKAFLADVERYSKEDFKSYQSSDKA 398


>SB_42064| Best HMM Match : Queuosine_synth (HMM E-Value=2.4)
          Length = 623

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 221 NLLRKIHEFVEKSSFCCFL*ARRFLPLPTCSPHYSKSLFKNYHSSKQA 78
           N+L+++     KS+ CC +  +++         YSK  FK+Y SS +A
Sbjct: 391 NVLQQLISHKMKSTHCCDIALQQYKAFLADVERYSKEDFKSYQSSDKA 438


>SB_40921| Best HMM Match : Choline_kin_N (HMM E-Value=2.8)
          Length = 351

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 221 NLLRKIHEFVEKSSFCCFL*ARRFLPLPTCSPHYSKSLFKNYHSSKQA 78
           N+L+++     KS+ CC +  +++         YSK  FK+Y SS +A
Sbjct: 163 NVLQQLISHKMKSTHCCDIALQQYKAFLADVERYSKEDFKSYQSSDKA 210


>SB_27266| Best HMM Match : GBP_C (HMM E-Value=1.4)
          Length = 934

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 221 NLLRKIHEFVEKSSFCCFL*ARRFLPLPTCSPHYSKSLFKNYHSSKQA 78
           N+L+++     KS+ CC +  +++         YSK  FK+Y SS +A
Sbjct: 720 NVLQQLISHKMKSTHCCDIALQQYKAFLADVERYSKEDFKSYQSSDKA 767


>SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13)
          Length = 1582

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 221 NLLRKIHEFVEKSSFCCFL*ARRFLPLPTCSPHYSKSLFKNYHSSKQA 78
           N+L+++     KS+ CC +  +++         YSK  FK+Y SS +A
Sbjct: 14  NVLQQLISHKMKSTHCCDIALQQYKAFLADVERYSKEDFKSYQSSDKA 61


>SB_16936| Best HMM Match : Borrelia_orfA (HMM E-Value=2.2)
          Length = 399

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 221 NLLRKIHEFVEKSSFCCFL*ARRFLPLPTCSPHYSKSLFKNYHSSKQA 78
           N+L+++     KS+ CC +  +++         YSK  FK+Y SS +A
Sbjct: 163 NVLQQLISHKMKSTHCCDIALQQYKAFLADVERYSKEDFKSYQSSDKA 210


>SB_9961| Best HMM Match : Borrelia_orfA (HMM E-Value=2.3)
          Length = 358

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 221 NLLRKIHEFVEKSSFCCFL*ARRFLPLPTCSPHYSKSLFKNYHSSKQA 78
           N+L+++     KS+ CC +  +++         YSK  FK+Y SS +A
Sbjct: 122 NVLQQLISHKMKSTHCCDIALQQYKAFLADVERYSKEDFKSYQSSDKA 169


>SB_9498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 651

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 221 NLLRKIHEFVEKSSFCCFL*ARRFLPLPTCSPHYSKSLFKNYHSSKQA 78
           N+L+++     KS+ CC +  +++         YSK  FK+Y SS +A
Sbjct: 516 NVLQQLISHKMKSTHCCDIALQQYKAFLADVERYSKEDFKSYQSSDKA 563


>SB_23039| Best HMM Match : rve (HMM E-Value=2.8e-20)
          Length = 984

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 188 FQRTHGFFLVN*CESCRSKLVCMQNFSKMSLCNSTFYRTSN 310
           ++  HG+F+   C SC    V M+  S    C   FYR +N
Sbjct: 185 YKAVHGYFV---CASCPDNSVAMEIGSTSCTCVRGFYRKAN 222


>SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)
          Length = 1066

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 323 LMIKYWKFDKKLNCTTTFLRNFAYI 249
           ++IK W +DKK  CT  F  +  Y+
Sbjct: 37  MLIKLWDWDKKWQCTQVFEGHTHYV 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,545,490
Number of Sequences: 59808
Number of extensions: 271089
Number of successful extensions: 777
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)