Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311A10f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101305-1|AAF98592.2|  179|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AF101305-1|AAF98592.2|  179|Caenorhabditis elegans Hypothetical
           protein C04F5.2 protein.
          Length = 179

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -1

Query: 290 LNCTTTFLRNFAYIQVSNDK---IHINLLRKIHEFVEKSSFCCFL 165
           LNCT+  LRN   + V+ DK   I I L   +   VE S F   L
Sbjct: 15  LNCTSVMLRNHFIVAVNVDKIAQISIGLYYALLILVESSLFFLLL 59


>AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical
           protein F53H1.3 protein.
          Length = 554

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 280 QRHF*EILHTYKFRTTRFTS--IY*EKSMSSLKNLAFVVSFKHEDF 149
           QRHF E+ H++     R+ S  +  +K MS  K +     F  +DF
Sbjct: 381 QRHFLELTHSFMIPMERYLSSLMPLKKEMSPFKGIPSTRPFSMDDF 426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,125,209
Number of Sequences: 27780
Number of extensions: 219106
Number of successful extensions: 669
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)