Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311A10f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09240.3 68418.m01063 transcriptional coactivator p15 (PC4) f...    28   4.4  
At1g52650.1 68414.m05945 F-box family protein contains F-box dom...    27   5.8  

>At5g09240.3 68418.m01063 transcriptional coactivator p15 (PC4)
           family protein similar to SP|P11031 Activated RNA
           polymerase II transcriptional coactivator p15 precursor
           (PC4) (p14) (Single-stranded DNA binding protein p9)
           {Mus musculus}; contains Pfam profile PF02229:
           Transcriptional Coactivator p15 (PC4)
          Length = 120

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 483 GGTYPCGLTRGPTTSVCFL--FLLSRIANFLIC 391
           G T PC   +GP   VCFL   +L+R +   IC
Sbjct: 72  GITLPCNSKQGPAILVCFLCIIMLTRFSMSPIC 104


>At1g52650.1 68414.m05945 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 465

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +3

Query: 336 CCESVPRFGLLSTLSV*LCK*ENLQSVIIKTRNKHWW*DLL*VRTGRYHHPAYFCREA 509
           CCES+P F  L +L++   +    Q++ +  RN      L  V  G  HH    CR A
Sbjct: 310 CCESMPLFNNLKSLTIESNERRGWQAMPVLLRNCPHLETL--VLEGLLHHVTEKCRNA 365


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,097,123
Number of Sequences: 28952
Number of extensions: 185858
Number of successful extensions: 555
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)