Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311A08f
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   3.1  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   5.4  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   7.1  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +2

Query: 257 YALPYTVVSIPHHL*YQI--PTSQDI 328
           Y+ PY +++ PH   YQI  P + +I
Sbjct: 428 YSGPYKIIAKPHPNTYQIADPVTNEI 453


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 213 FNRIGGVQQHVFTE 254
           FN +  VQQH F +
Sbjct: 101 FNSVRNVQQHTFAD 114


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 282 QYPIIYDIRSRPRKISSPTGSKDLQMVNIS 371
           +YP+I  +R   R IS    +KD+    I+
Sbjct: 444 KYPLIGAMREELRGISRGKNAKDVDWQKIA 473


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,041
Number of Sequences: 336
Number of extensions: 2236
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)