Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311A08f
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...   125   4e-30
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|...   122   3e-29
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    28   0.58 
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    26   3.1  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    25   5.4  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.1  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   7.1  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    24   9.4  

>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score =  125 bits (301), Expect = 4e-30
 Identities = 55/91 (60%), Positives = 71/91 (78%)
 Frame = +3

Query: 174 SVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDL 353
           S+F V+GGHRAI ++RIGG++  ++ EG HF IPW +  I YD+R++PR ISS TG+KDL
Sbjct: 35  SLFNVDGGHRAIKYSRIGGIKNLIYPEGTHFLIPWIETAIDYDVRAKPRNISSLTGTKDL 94

Query: 354 QMVNISLRVLSRPDANMLATMYRQLGTDYDE 446
           QMVNI+ RVLSRPD + L  +YR LG DYDE
Sbjct: 95  QMVNINCRVLSRPDVHALPKIYRTLGGDYDE 125


>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score =  122 bits (293), Expect = 3e-29
 Identities = 52/91 (57%), Positives = 70/91 (76%)
 Frame = +3

Query: 174 SVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDL 353
           S++ V GG RA++F+R+ GVQ+ V  EG HF IPW Q  I+YD+R+RPR I++ TGSKDL
Sbjct: 25  SIYDVPGGKRAVLFDRLSGVQKQVVQEGTHFLIPWLQKAIVYDVRTRPRNIATTTGSKDL 84

Query: 354 QMVNISLRVLSRPDANMLATMYRQLGTDYDE 446
           QMV+++LRVL RP+  ML  +Y+ LG DYDE
Sbjct: 85  QMVSLTLRVLHRPEVGMLPQIYQNLGLDYDE 115


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 234 QQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKD 350
           Q H F +  ++ +PW+  P      +  R +  PTG+ D
Sbjct: 324 QIHYFEDFGYYHLPWYHCPTDVQSHATARCLCDPTGTID 362


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 184 PWKEVIVPLCSTE*EEYNSTYSLKVCTSVYRGFNTPSF 297
           P    + PL  T  E ++S+ SLK  + +++ FN  +F
Sbjct: 114 PHVHALKPLLDTAWEIFDSSPSLKTLSMLHKSFNLHNF 151


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 166 SPNRCLPWKEVIVPLCSTE*EEYNST 243
           SP+  LP+K  ++P+  T  EE NS+
Sbjct: 259 SPSPSLPFKTPLLPVTKTPLEEANSS 284


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 235  NSTYSLKVCTSVYRGFNTPSFMISDPDL 318
            NSTY LK  ++VY   N  SF  S P L
Sbjct: 2288 NSTYLLKSASAVYH--NVSSFKGSTPSL 2313


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 320 QDIFPDWFKRFTDGKH 367
           ++++PD+ + F DGKH
Sbjct: 718 EELYPDYTRDFFDGKH 733


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 305 DIINDGVLKPRYTE 264
           D I+DGVL P YTE
Sbjct: 289 DYIHDGVLIPAYTE 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,897,855
Number of Sequences: 5004
Number of extensions: 37605
Number of successful extensions: 86
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)