Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311A08f
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702... 121 2e-28
04_04_0143 - 23091613-23092467 111 2e-25
02_04_0362 - 22366668-22367516 110 6e-25
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925... 91 3e-19
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 80 7e-16
03_06_0427 - 33857008-33857137,33857224-33857258,33857966-338580... 62 2e-10
05_02_0099 - 6582498-6582725,6583148-6583235,6583437-6583830,658... 32 0.19
03_06_0060 + 31341233-31342009,31342752-31342871,31343401-313435... 27 7.0
02_03_0062 + 14586152-14586461,14586792-14587075,14587807-14588079 27 7.0
02_02_0548 - 11403442-11404205,11404520-11404811,11404917-114050... 27 7.0
11_04_0407 + 17335773-17335777,17335930-17336635,17336844-173375... 27 9.2
03_01_0482 - 3686954-3688564 27 9.2
>03_06_0626 -
35169352-35169546,35169736-35169948,35170102-35170272,
35170826-35170942,35171078-35171233
Length = 283
Score = 121 bits (292), Expect = 2e-28
Identities = 52/91 (57%), Positives = 70/91 (76%)
Frame = +3
Query: 174 SVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDL 353
S++ VEGGHRAI+FNR+ G++ V+ EG HF IPWF+ PIIYD+R+RP + S +GS+DL
Sbjct: 30 SLYNVEGGHRAIVFNRLEGIKDKVYPEGTHFMIPWFERPIIYDVRARPNLVESTSGSRDL 89
Query: 354 QMVNISLRVLSRPDANMLATMYRQLGTDYDE 446
QMV I LRVL+RP L T+YR LG +++E
Sbjct: 90 QMVRIGLRVLTRPLPEKLPTIYRSLGENFNE 120
>04_04_0143 - 23091613-23092467
Length = 284
Score = 111 bits (268), Expect = 2e-25
Identities = 48/93 (51%), Positives = 67/93 (72%)
Frame = +3
Query: 168 SQSVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSK 347
S S++TV+GG RA++F+R GV EG HF +PW Q P ++DIR+RP SS +G+K
Sbjct: 29 SASLYTVDGGERAVIFDRFRGVLPETVGEGTHFLVPWLQKPFVFDIRTRPHNFSSNSGTK 88
Query: 348 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDE 446
DLQMVN++LR+LSRPD L T++ LG +YD+
Sbjct: 89 DLQMVNLTLRLLSRPDVVHLPTIFTSLGLEYDD 121
>02_04_0362 - 22366668-22367516
Length = 282
Score = 110 bits (264), Expect = 6e-25
Identities = 47/93 (50%), Positives = 68/93 (73%)
Frame = +3
Query: 168 SQSVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSK 347
S +++TV+GG RA++F+R GV +EG HF +PW Q P I+DIR+RP SS +G+K
Sbjct: 30 STALYTVDGGQRAVIFDRFRGVLPETSSEGTHFIVPWLQKPFIFDIRTRPHSFSSTSGTK 89
Query: 348 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDE 446
DLQMV+++LRVL+RPD + L ++ LG +YDE
Sbjct: 90 DLQMVSLTLRVLARPDIDRLPDIFTSLGLEYDE 122
>07_01_1055 -
9253936-9254130,9254271-9254483,9254588-9254758,
9255743-9255859,9257021-9257186,9258885-9258934,
9259095-9259268
Length = 361
Score = 91.5 bits (217), Expect = 3e-19
Identities = 40/73 (54%), Positives = 52/73 (71%)
Frame = +3
Query: 228 GVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLSRPDANML 407
G V+ EG HF IPWF+ PIIYD+R+RP + S +GS+DLQMV I LRVL+RP L
Sbjct: 126 GTIYQVYPEGTHFMIPWFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPMPEKL 185
Query: 408 ATMYRQLGTDYDE 446
T+YR LG +++E
Sbjct: 186 PTIYRTLGENFNE 198
Score = 36.3 bits (80), Expect = 0.011
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = +3
Query: 174 SVFTVEGGHRAIMFNRIGGVQ 236
S++ VEGGHRAI+FNRI G++
Sbjct: 36 SLYNVEGGHRAIVFNRIQGIK 56
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 80.2 bits (189), Expect = 7e-16
Identities = 37/70 (52%), Positives = 49/70 (70%)
Frame = +3
Query: 237 QHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLSRPDANMLATM 416
Q V+ EG F I F+ PIIYD+R+RP + S +GS+DLQMV I LRVL+RP L T+
Sbjct: 216 QEVYPEGTQFMILLFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPLPEKLPTI 275
Query: 417 YRQLGTDYDE 446
YR LG +++E
Sbjct: 276 YRSLGENFNE 285
>03_06_0427 -
33857008-33857137,33857224-33857258,33857966-33858046,
33858213-33858338,33858410-33858568,33858797-33858934,
33859084-33859155,33859359-33860273
Length = 551
Score = 62.5 bits (145), Expect = 2e-10
Identities = 35/82 (42%), Positives = 47/82 (57%)
Frame = +3
Query: 201 RAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRV 380
R I N+ + Q + E HF IPWF+ I+D+ RP + S +GS+DLQMV L V
Sbjct: 323 REICNNKAVRLLQLLNPEKSHFSIPWFERLTIFDVCPRPNLVESTSGSRDLQMVRPGLGV 382
Query: 381 LSRPDANMLATMYRQLGTDYDE 446
L+RP L T YR LG ++ E
Sbjct: 383 LTRP----LPTKYRSLGDNFCE 400
>05_02_0099 -
6582498-6582725,6583148-6583235,6583437-6583830,
6585855-6585990,6586413-6586931
Length = 454
Score = 32.3 bits (70), Expect = 0.19
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +3
Query: 189 EGGHRAIMFNRI--GGVQQHVFTEGMHFRIPWFQYPIIYDIRSRP 317
EGGHR +++ + GG+Q+H++ G +I F IY ++ RP
Sbjct: 194 EGGHRLLVYEFMANGGLQEHLYPNGAFEKIETFS---IYLVKQRP 235
>03_06_0060 +
31341233-31342009,31342752-31342871,31343401-31343517,
31343615-31343704,31344279-31344386,31345124-31345306
Length = 464
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 170 GDAISRSADNGYHFETDAKTRWPTFSEFSCHVIYLTLCH 54
GD RS+ +GY ++ K RW S+ C + LC+
Sbjct: 198 GDQHGRSS-SGYGLDSQVKRRWLGCSKVDCEHLLRILCN 235
>02_03_0062 + 14586152-14586461,14586792-14587075,14587807-14588079
Length = 288
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = +1
Query: 235 NSTYSLKVCTSVYRGFNTPSFMISDPDLARYLPRLVQKIYRW 360
++ ++ K+ T ++ F TP +ISD + + K+ +W
Sbjct: 78 DARHAKKMFTEIFPRFGTPRMVISDGGAGEWRKMQIAKLEKW 119
>02_02_0548 -
11403442-11404205,11404520-11404811,11404917-11405016,
11405049-11405458
Length = 521
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 377 STFST-RCQYASNNVQTTWN 433
STFST +C Y +NN+ T+N
Sbjct: 350 STFSTSKCDYVTNNIAETFN 369
>11_04_0407 +
17335773-17335777,17335930-17336635,17336844-17337542,
17340710-17340724,17341479-17342126
Length = 690
Score = 26.6 bits (56), Expect = 9.2
Identities = 21/49 (42%), Positives = 25/49 (51%)
Frame = +1
Query: 289 PSFMISDPDLARYLPRLVQKIYRW*TFPSEYFLDQMPIC*QQCTDNLEQ 435
P MI P +A Y L YR TFPSE+F + M CTD +EQ
Sbjct: 347 PDIMI--PTIALYANLLY---YRDTTFPSEHFFETMLPVFLSCTD-IEQ 389
>03_01_0482 - 3686954-3688564
Length = 536
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Frame = -3
Query: 384 KVLGGKCL-----PSVNLLNQSGKISCEVGI 307
KVL CL PS NLL +G ++C VG+
Sbjct: 284 KVLDVNCLTEDAAPSANLLGSNGVVNCGVGL 314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,177,693
Number of Sequences: 37544
Number of extensions: 243193
Number of successful extensions: 545
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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