Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311A08f
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13169| Best HMM Match : Band_7 (HMM E-Value=1.4013e-45)            116   7e-27
SB_8661| Best HMM Match : Band_7 (HMM E-Value=3.7e-16)                 54   5e-08
SB_13995| Best HMM Match : ASC (HMM E-Value=0.0034)                    28   4.1  
SB_58248| Best HMM Match : Pox_A32 (HMM E-Value=0.97)                  27   7.2  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    27   9.5  

>SB_13169| Best HMM Match : Band_7 (HMM E-Value=1.4013e-45)
          Length = 242

 Score =  116 bits (280), Expect = 7e-27
 Identities = 52/93 (55%), Positives = 67/93 (72%)
 Frame = +3

Query: 168 SQSVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSK 347
           + ++F V+GGHRA++F+R  GV+  V  EG HF IPW Q PII+DIR+RPR +   TGSK
Sbjct: 24  NSALFNVDGGHRAVIFDRFQGVKPDVVGEGTHFLIPWVQRPIIFDIRTRPRNVPVTTGSK 83

Query: 348 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDE 446
           DLQ VNI+LR+L RP   +L  +Y  LG DYDE
Sbjct: 84  DLQNVNITLRILYRPQPQVLPKIYMNLGEDYDE 116


>SB_8661| Best HMM Match : Band_7 (HMM E-Value=3.7e-16)
          Length = 500

 Score = 54.0 bits (124), Expect = 5e-08
 Identities = 24/33 (72%), Positives = 28/33 (84%)
 Frame = +3

Query: 348 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDE 446
           DLQMVNI LRVL+RP+AN L  MYR+LG D+DE
Sbjct: 357 DLQMVNIGLRVLARPEANKLPPMYRKLGLDFDE 389


>SB_13995| Best HMM Match : ASC (HMM E-Value=0.0034)
          Length = 610

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 387 EKVLGGKCLPSVNLLNQSGKISC 319
           E VLG +CL  VN++ Q G + C
Sbjct: 96  ELVLGWRCLNRVNMMYQEGGLKC 118


>SB_58248| Best HMM Match : Pox_A32 (HMM E-Value=0.97)
          Length = 540

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = +3

Query: 189 EGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDL 353
           EG ++ I+F+  GG+++++ + G H+R+         D R R R+ S+P G   L
Sbjct: 292 EGPNKLIIFDDWGGLKRNLVSPGKHWRLCLGP----EDGRRRRRENSTPRGLSPL 342


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 273  PWFQYPIIYDIRSRPR-KISSPTGSK--DLQMVNISLRVLSRPDANMLATMYR 422
            PW +   +     +P   IS+ T S+  D + V  SL+ LSR DAN +   YR
Sbjct: 1463 PWSEPMAVLTDADKPEGTISNVTFSEPPDSRSVQFSLQPLSRQDANGMILGYR 1515


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 171 QSVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRI 272
           + V  +  G R I F + GG  +HVF +G   R+
Sbjct: 279 RKVHVMRRGGRKIYFIKFGGKARHVFIKGNKARV 312


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,128,390
Number of Sequences: 59808
Number of extensions: 277414
Number of successful extensions: 678
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)