Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311A08f
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial p...   146   9e-36
AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial...   109   1e-24
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    31   0.51 
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    28   2.7  
Z49911-7|CAA90129.1|  861|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U88171-2|AAB42252.1|  434|Caenorhabditis elegans Glutamate-gated...    27   8.3  
U14525-1|AAA50786.1|  434|Caenorhabditis elegans avermectin-sens...    27   8.3  

>U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 2 protein.
          Length = 294

 Score =  146 bits (353), Expect = 9e-36
 Identities = 65/93 (69%), Positives = 78/93 (83%)
 Frame = +3

Query: 168 SQSVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSK 347
           +QS+FTVE GHRAIMFNRIGG+   ++ EG+HFRIPWFQYPIIYDIR+RP +I SPTGSK
Sbjct: 37  AQSMFTVEAGHRAIMFNRIGGLSTDLYKEGLHFRIPWFQYPIIYDIRARPNQIRSPTGSK 96

Query: 348 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDE 446
           DLQMVNI LRVLSRP+   L  +YR LG +++E
Sbjct: 97  DLQMVNIGLRVLSRPNPEHLVHIYRTLGQNWEE 129


>AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 1 protein.
          Length = 275

 Score =  109 bits (261), Expect = 1e-24
 Identities = 48/91 (52%), Positives = 65/91 (71%)
 Frame = +3

Query: 174 SVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDL 353
           +++ V+GG RA++F+R  GV+  V  EG HF IPW Q PII+DIRS PR +++ TGSKDL
Sbjct: 29  ALYNVDGGQRAVIFDRFSGVKNEVVGEGTHFLIPWVQKPIIFDIRSTPRAVTTITGSKDL 88

Query: 354 QMVNISLRVLSRPDANMLATMYRQLGTDYDE 446
           Q VNI+LR+L RP  + L  +Y  +G DY E
Sbjct: 89  QNVNITLRILHRPSPDRLPNIYLNIGLDYAE 119


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 253 KVCTSVYRGFNTPSFMISDPDLARYLPRLVQKI 351
           K  T +  GFN PS MISD +L   + R+++ +
Sbjct: 291 KTSTDIIDGFNVPSNMISDDNLPALIYRVIETL 323


>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
           protein Y73F8A.5 protein.
          Length = 1019

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 323 DIFPDWFKRFTDGKHFPPSTFSTRCQYASNNVQTTWN 433
           D  P++  ++ + +  PP   STRC+Y S +V T  N
Sbjct: 405 DTVPNYGLQYQNWEVLPPK-LSTRCEYISEDVATACN 440


>Z49911-7|CAA90129.1|  861|Caenorhabditis elegans Hypothetical
           protein M28.9 protein.
          Length = 861

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 369 KCLPSVNLLNQSGKISCE-VGI*YHK*W 289
           KC P V++ N +G + CE VG+  H  W
Sbjct: 650 KCRPLVDIYNNAGVLVCEQVGLPIHGLW 677


>U88171-2|AAB42252.1|  434|Caenorhabditis elegans Glutamate-gated
           chloride channelprotein 2 protein.
          Length = 434

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 297 YDIRSRPRKISSPTGSKDLQMVNISLRVLSRPD 395
           YD+R RP   +S T       VNI +R+LS+ D
Sbjct: 40  YDMRVRPPPANSSTEGAVNVRVNIMIRMLSKID 72


>U14525-1|AAA50786.1|  434|Caenorhabditis elegans
           avermectin-sensitive glutamate-gated chloride channel
           GluCl beta protein.
          Length = 434

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 297 YDIRSRPRKISSPTGSKDLQMVNISLRVLSRPD 395
           YD+R RP   +S T       VNI +R+LS+ D
Sbjct: 40  YDMRVRPPPANSSTEGAVNVRVNIMIRMLSKID 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,421,564
Number of Sequences: 27780
Number of extensions: 211102
Number of successful extensions: 453
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)