Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311A08f
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    25   0.50 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   3.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   4.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   6.2  

>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 24.6 bits (51), Expect = 0.50
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 266 PYTVVSIPHHL*YQIPT 316
           PY V  +PHHL   +PT
Sbjct: 4   PYHVAQLPHHLSPNMPT 20


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 315 PRKISSPTGSKDLQMVNISLRVLSRPDAN 401
           P+   S TGS  +  +N+S  ++S+P  N
Sbjct: 356 PKSSESSTGSS-IPKLNLSTALMSQPPPN 383


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 326 YLARSGSDIINDGVLKP 276
           Y+ RS   ++ DG LKP
Sbjct: 245 YVYRSVDQVLEDGKLKP 261


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 289 PSFMISDPDLARYLPRLVQKIYRW*TFPSEYFLDQMPI 402
           PSF +        +PRL +K  +      + F DQM +
Sbjct: 34  PSFSVHQVYPENLIPRLAKKAIQVLGVTEKEFFDQMGV 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,570
Number of Sequences: 438
Number of extensions: 2307
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)