Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311A04f
(521 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127; Euka... 167 1e-40
UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes ... 167 1e-40
UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4; Eukary... 131 8e-30
UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5; Magnol... 121 9e-27
UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1; O... 110 2e-23
UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia... 105 6e-22
UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of cy... 99 7e-20
UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2; Neoptera... 97 3e-19
UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protei... 93 5e-18
UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n... 57 2e-17
UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative; n... 89 4e-17
UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1; Guilla... 83 4e-15
UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1; Enceph... 80 3e-14
UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7; T... 79 5e-14
UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45; root|... 62 1e-08
UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1; Methan... 56 7e-07
UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus ... 55 1e-06
UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum... 53 5e-06
UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11; Eurya... 52 1e-05
UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1; Archae... 50 3e-05
UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4; Haloba... 48 1e-04
UniRef50_Q53K43 Cluster: Retrotransposon protein, putative, uncl... 48 2e-04
UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum ... 48 2e-04
UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1; Nanoar... 48 2e-04
UniRef50_UPI0000EBD60B Cluster: PREDICTED: similar to ribosomal ... 46 5e-04
UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5; Thermo... 46 7e-04
UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropy... 45 0.001
UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured... 44 0.002
UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1; Arabido... 42 0.009
UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum... 42 0.011
UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6; Methan... 39 0.080
UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3; Sulfol... 38 0.18
UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiel... 36 0.43
UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 36 0.74
UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 35 1.3
UniRef50_Q3AW67 Cluster: 50S ribosomal protein L13; n=12; Bacter... 34 2.3
UniRef50_Q7V521 Cluster: 50S ribosomal protein L13; n=32; Bacter... 33 4.0
UniRef50_A7H7V3 Cluster: Putative uncharacterized protein; n=2; ... 32 9.2
UniRef50_Q1AU63 Cluster: 50S ribosomal protein L13; n=3; Bacteri... 32 9.2
>UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127;
Eukaryota|Rep: 60S ribosomal protein L13A - Drosophila
melanogaster (Fruit fly)
Length = 205
Score = 167 bits (407), Expect = 1e-40
Identities = 76/144 (52%), Positives = 95/144 (65%)
Frame = -2
Query: 493 LRKRCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXX 314
LRKRC VNPARGPFHFRAPS+I +K VRGMIPHKT+RG+ AL RLR +DG P P+D
Sbjct: 60 LRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRR 119
Query: 313 XXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXXXXXXXXXXAYEKKLKRI 134
V L+ R YC VGRLSHE+GW Y+DV++ LE + ++LK++
Sbjct: 120 VVVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKL 179
Query: 133 TKDAGEKVSKATTPFTTIIQSYGY 62
T A E ++KA PF II+SYGY
Sbjct: 180 TVKARENIAKAAEPFNKIIKSYGY 203
>UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes
aegypti|Rep: 60S ribosomal protein L13a - Aedes aegypti
(Yellowfever mosquito)
Length = 236
Score = 167 bits (406), Expect = 1e-40
Identities = 73/144 (50%), Positives = 92/144 (63%)
Frame = -2
Query: 493 LRKRCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXX 314
LRKRC VNPARGPFHFRAPS++LWK VRGM+PHKT+RG NAL+RL+ Y+G P PFD
Sbjct: 60 LRKRCNVNPARGPFHFRAPSRMLWKAVRGMVPHKTKRGHNALKRLKVYEGIPSPFDRQKR 119
Query: 313 XXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXXXXXXXXXXAYEKKLKRI 134
CL+P R +C VGR++HE+GWKYRDVV LE + KKLK++
Sbjct: 120 LCVPTAMRQLCLRPDRKFCDVGRVAHEVGWKYRDVVNNLEAKRKIKSRLSYLHSKKLKKL 179
Query: 133 TKDAGEKVSKATTPFTTIIQSYGY 62
T A V+ +++ YGY
Sbjct: 180 TWKARTAVADKVKDQDAVLRKYGY 203
>UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4;
Eukaryota|Rep: 60S ribosomal protein L13a - Cyanophora
paradoxa
Length = 200
Score = 131 bits (317), Expect = 8e-30
Identities = 61/144 (42%), Positives = 84/144 (58%)
Frame = -2
Query: 493 LRKRCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXX 314
L+KR NP RGPFHFR+P++ILW+T+RGMIPHKT RG AL RL+ ++G PPP+D
Sbjct: 57 LKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKR 116
Query: 313 XXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXXXXXXXXXXAYEKKLKRI 134
V LKPGR +C +GRL+ E+GW++ D+V +LE A +K L +
Sbjct: 117 MVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTLVNL 176
Query: 133 TKDAGEKVSKATTPFTTIIQSYGY 62
A V+ T + YG+
Sbjct: 177 RAKAAVAVASKTANIQKELDHYGF 200
>UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5;
Magnoliophyta|Rep: 60S ribosomal protein L13a - Capsicum
annuum (Bell pepper)
Length = 220
Score = 121 bits (292), Expect = 9e-27
Identities = 52/100 (52%), Positives = 67/100 (67%)
Frame = -2
Query: 493 LRKRCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXX 314
LRKR P+ GP HFRAPSKILW+T+RGMIPHKT+RG AL RL+ Y+G PPP+D
Sbjct: 63 LRKRMNTKPSHGPIHFRAPSKILWRTIRGMIPHKTKRGAAALARLKVYEGVPPPYDKIKR 122
Query: 313 XXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 194
V L+ G YC +G+LS E+GW + D +++LE
Sbjct: 123 MVIPDALKVLRLQAGHKYCLLGKLSSEVGWNHYDTIKELE 162
>UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
ribosomal protein L13a - Oryza sativa subsp. japonica
(Rice)
Length = 172
Score = 110 bits (265), Expect = 2e-23
Identities = 56/132 (42%), Positives = 73/132 (55%), Gaps = 2/132 (1%)
Frame = -2
Query: 484 RCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 305
R P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+ PP+D
Sbjct: 40 RMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVI 99
Query: 304 XXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXXXXXXXXXXAYEKKLKRITKD 125
V L+PG YC +G+LS E+GW Y D +R LK +
Sbjct: 100 PDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIRICVLCIGGGCCDEDIMLPLLKALRTL 159
Query: 124 AG--EKVSKATT 95
AG E++ KATT
Sbjct: 160 AGRIEQIIKATT 171
>UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_608_8346_8939 - Giardia lamblia ATCC
50803
Length = 197
Score = 105 bits (252), Expect = 6e-22
Identities = 53/144 (36%), Positives = 76/144 (52%)
Frame = -2
Query: 493 LRKRCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXX 314
+ KR N RGPFHFRAP++I+ +T+RGMIP+KT RG +A+ RLR YDG PP
Sbjct: 55 MHKRTNFNHLRGPFHFRAPAEIVRRTIRGMIPYKTVRGSDAMSRLRVYDGIPPCCARYKR 114
Query: 313 XXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXXXXXXXXXXAYEKKLKRI 134
CL+P R C VGR++HEIGW++ V + E + ++ +
Sbjct: 115 VVCPSAMAYLCLRPERRRCEVGRVAHEIGWQHAADVERYEKRRLEECDKWYQDKIQIDKK 174
Query: 133 TKDAGEKVSKATTPFTTIIQSYGY 62
+A EK ++ + YGY
Sbjct: 175 IAEAAEKDAELQR-INAELAKYGY 197
>UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit; n=2;
Ostreococcus|Rep: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit -
Ostreococcus lucimarinus CCE9901
Length = 199
Score = 98.7 bits (235), Expect = 7e-20
Identities = 41/98 (41%), Positives = 58/98 (59%)
Frame = -2
Query: 487 KRCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXX 308
KR NP +GP+H+ +PS++ WKTVRGM+PHKT RG A R + Y+G P P+D
Sbjct: 58 KRMNTNPKKGPYHYTSPSRLFWKTVRGMLPHKTVRGAAAFERFKAYEGIPAPYDKVKRAV 117
Query: 307 XXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 194
V L G +C +G +IGWK+ +V++LE
Sbjct: 118 VPEALKVLRLGEGHRFCVLGDFCEQIGWKHGAIVKELE 155
>UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2;
Neoptera|Rep: Ribomsomal protein L13Ae - Cicindela
campestris (Green tiger beetle)
Length = 78
Score = 96.7 bits (230), Expect = 3e-19
Identities = 39/75 (52%), Positives = 50/75 (66%)
Frame = -2
Query: 283 CLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXXXXXXXXXXAYEKKLKRITKDAGEKVSK 104
CLKPGR YCHVGRLSHE+GWKY+ V+ LE +K+KR+TK A +K+ K
Sbjct: 4 CLKPGRKYCHVGRLSHEVGWKYQKVIESLEHKRQVKVAIKARKHRKMKRLTKKASKKIEK 63
Query: 103 ATTPFTTIIQSYGYN 59
P+T +I+SYGYN
Sbjct: 64 QVAPYTAVIKSYGYN 78
>UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protein;
n=16; Alveolata|Rep: Ribosomal protein L13 containing
protein - Tetrahymena thermophila SB210
Length = 270
Score = 92.7 bits (220), Expect = 5e-18
Identities = 50/144 (34%), Positives = 71/144 (49%)
Frame = -2
Query: 493 LRKRCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXX 314
L K NP RG HFRAPS+I W+ VRGM+PHKT +G AL RL+ ++G P P+D
Sbjct: 129 LNKWMNHNPRRGVQHFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKK 188
Query: 313 XXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXXXXXXXXXXAYEKKLKRI 134
V L+ R C +G LS +GW + ++ KLE ++KK+K+
Sbjct: 189 QVVVDALKVQRLRNSRPVCKLGDLSASVGWGKQTLIEKLE--EKRRARAKTYHDKKVKQA 246
Query: 133 TKDAGEKVSKATTPFTTIIQSYGY 62
E + A + +GY
Sbjct: 247 DARKKELAAPALKAIKDKLAQFGY 270
>UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB39CE UniRef100
entry - Canis familiaris
Length = 172
Score = 56.8 bits (131), Expect(2) = 2e-17
Identities = 25/72 (34%), Positives = 41/72 (56%)
Frame = -2
Query: 280 LKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXXXXXXXXXXAYEKKLKRITKDAGEKVSKA 101
LKP R + ++GRL+H++GWKY+ V LE +K+L R+ K A + V K
Sbjct: 98 LKPTRKFAYLGRLAHKVGWKYQAVTATLEENRKEKAKIHYWKKKQLMRLWKQAKKNVEKK 157
Query: 100 TTPFTTIIQSYG 65
T +T ++++G
Sbjct: 158 TDKYTEFLKTHG 169
Score = 54.0 bits (124), Expect(2) = 2e-17
Identities = 21/35 (60%), Positives = 27/35 (77%)
Frame = -2
Query: 493 LRKRCXVNPARGPFHFRAPSKILWKTVRGMIPHKT 389
L K+ NP+RGP+ F+APS+I W T RGM+PHKT
Sbjct: 57 LCKQMNTNPSRGPYRFQAPSRIFWWTARGMLPHKT 91
>UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative;
n=10; Trypanosomatidae|Rep: 60S ribosomal protein L13a,
putative - Leishmania major
Length = 222
Score = 89.4 bits (212), Expect = 4e-17
Identities = 50/146 (34%), Positives = 68/146 (46%), Gaps = 2/146 (1%)
Frame = -2
Query: 493 LRKRCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPP-PFDNXX 317
LRKR NP +GPFH RAPS + +TVR M+P T+RG AL L Y+G PP
Sbjct: 76 LRKRKLTNPTKGPFHHRAPSDVFVRTVRSMLPRYTKRGMKALNSLVAYEGIPPNVVRTGG 135
Query: 316 XXXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXXXXXXXXXXAYEKKLKR 137
C + R Y +G + +GWKY DVV LE + KL+
Sbjct: 136 RVVIPRAQRHVCYRSERPYTVLGNMCKHVGWKYSDVVANLEKARVEKASRHHEKQAKLRD 195
Query: 136 ITKDA-GEKVSKATTPFTTIIQSYGY 62
K A E ++K +++ +GY
Sbjct: 196 AWKSARKEALAKMPKHNVEVLKKFGY 221
>UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1;
Guillardia theta|Rep: 60s ribosomal protein L13A -
Guillardia theta (Cryptomonas phi)
Length = 194
Score = 83.0 bits (196), Expect = 4e-15
Identities = 36/97 (37%), Positives = 56/97 (57%)
Frame = -2
Query: 490 RKRCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXX 311
+K+ NP RGPFHF++PSKIL++T++ MIPHKT RG AL+ L+ ++G P F
Sbjct: 56 KKKTNTNPRRGPFHFKSPSKILYQTIKRMIPHKTMRGSKALKNLKIFEGLPRIFSKIKKE 115
Query: 310 XXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRK 200
+K R ++G++ +GWK R + +
Sbjct: 116 KFFEAFRYKVIKNYRKTVNLGKVCEVLGWKNRKFIEQ 152
>UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13A
- Encephalitozoon cuniculi
Length = 198
Score = 79.8 bits (188), Expect = 3e-14
Identities = 40/99 (40%), Positives = 51/99 (51%)
Frame = -2
Query: 493 LRKRCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXX 314
L KRC VNP RGPFHFR P L K +R MI +K RGK A+ RL TY+G P +
Sbjct: 58 LNKRCLVNPRRGPFHFREPRMHLAKIIRRMISYKKPRGKAAMSRLATYEGIPRELEGQPR 117
Query: 313 XXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKL 197
+ P R Y +G+L GWK+ + + L
Sbjct: 118 YKVTCAFVKYTGNPNR-YVTLGKLLSMFGWKHAEAAKSL 155
>UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7;
Trichomonas vaginalis G3|Rep: Ribosomal protein L13,
putative - Trichomonas vaginalis G3
Length = 200
Score = 79.4 bits (187), Expect = 5e-14
Identities = 46/130 (35%), Positives = 62/130 (47%)
Frame = -2
Query: 493 LRKRCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXX 314
L K NP GPFH RAP +I + VRGMIP+KT RG +A L+ Y+G P + +
Sbjct: 56 LNKTTNSNPRDGPFHQRAPHEIFARAVRGMIPYKTHRGADAFANLQCYEGIPAKYVSYKR 115
Query: 313 XXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXXXXXXXXXXAYEKKLKRI 134
+ R +GRLS +GWKY +VV +LE +K +
Sbjct: 116 LVIPHALRCVSIHTDRPTTKLGRLSTTMGWKYGNVVAQLEEQRKAESAKYFEAKKAAQDK 175
Query: 133 TKDAGEKVSK 104
A EKV+K
Sbjct: 176 RAAAIEKVNK 185
>UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45;
root|Rep: 50S ribosomal protein L13P - Pyrococcus
horikoshii
Length = 142
Score = 61.7 bits (143), Expect = 1e-08
Identities = 31/89 (34%), Positives = 47/89 (52%)
Frame = -2
Query: 484 RCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 305
R NP RGPF+ + +I+ +T+RGM+P KT+RG+ A RRL+ Y G P F +
Sbjct: 56 RTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETI 115
Query: 304 XXXXXVFCLKPGRNYCHVGRLSHEIGWKY 218
+P Y VG ++ +G K+
Sbjct: 116 VEAHVSRLSRP--KYVTVGEVAKFLGGKF 142
>UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1;
Methanopyrus kandleri|Rep: 50S ribosomal protein L13P -
Methanopyrus kandleri
Length = 159
Score = 55.6 bits (128), Expect = 7e-07
Identities = 29/84 (34%), Positives = 42/84 (50%)
Frame = -2
Query: 472 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 293
+P +GPF+ R P I + VRGM+P KT+RG+ A +RLR Y G P +
Sbjct: 71 DPKKGPFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGTPRWVEEANIEPERVAE 130
Query: 292 XVFCLKPGRNYCHVGRLSHEIGWK 221
Y +G LS E+G++
Sbjct: 131 ADMSRLGHLWYVTLGELSEELGYQ 154
>UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L13
- Candidatus Nitrosopumilus maritimus SCM1
Length = 154
Score = 54.8 bits (126), Expect = 1e-06
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Frame = -2
Query: 520 GTNSSLCHXLRK----RCXVNPARGPFHFRAPSKILWKTVRGMIPH-KTERGKNALRRLR 356
GT S+L R+ +NP GP H+R P I+ K +R M+P+ + GK +++RLR
Sbjct: 52 GTRSNLIKEYREFLEINSIINPKHGPVHYRRPDTIITKMIRQMLPYDRKPSGKESIKRLR 111
Query: 355 TYDGCPPPFDNXXXXXXXXXXXVFCLKPGRNYCHVGRLSHEIGW 224
Y G P + K NY +G L IGW
Sbjct: 112 AYIGSPKELKSLEKIQFEKAKIK---KSPSNYTTMGELCRVIGW 152
>UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L13 - Cenarchaeum
symbiosum
Length = 139
Score = 52.8 bits (121), Expect = 5e-06
Identities = 27/84 (32%), Positives = 38/84 (45%)
Frame = -2
Query: 475 VNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXX 296
++P GP+H R P I+ + +RGM+P K GK A RLR Y G P +
Sbjct: 57 IHPEHGPYHPRRPDTIMTRMIRGMLPRKKPSGKAAHSRLRAYIGSPGHLKSFEKRKLKGA 116
Query: 295 XXVFCLKPGRNYCHVGRLSHEIGW 224
+P NY + L +GW
Sbjct: 117 E---ITRPTANYTTMADLGETVGW 137
>UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11;
Euryarchaeota|Rep: 50S ribosomal protein L13P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 140
Score = 51.6 bits (118), Expect = 1e-05
Identities = 25/81 (30%), Positives = 43/81 (53%)
Frame = -2
Query: 460 GPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXVFC 281
GP+ + P +IL +T+RGM+P+K RG++A+ RL+ Y G P++
Sbjct: 62 GPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGV--PYELKGAETTTIADADMR 119
Query: 280 LKPGRNYCHVGRLSHEIGWKY 218
L Y +G +S ++G K+
Sbjct: 120 LLSSNKYVELGEVSQKMGSKF 140
>UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1;
Archaeoglobus fulgidus|Rep: 50S ribosomal protein L13P -
Archaeoglobus fulgidus
Length = 156
Score = 50.0 bits (114), Expect = 3e-05
Identities = 21/42 (50%), Positives = 30/42 (71%)
Frame = -2
Query: 463 RGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 338
+GP+ R P +I +TVRGM+P K+ RG++A RRLR + G P
Sbjct: 75 KGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVP 116
>UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4;
Halobacteriaceae|Rep: 50S ribosomal protein L13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 145
Score = 48.0 bits (109), Expect = 1e-04
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = -2
Query: 520 GTNSSLCHXLRKRCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGC 341
G + KR + G F+ + P I +T+RGM+PHK +RG+ A +R Y G
Sbjct: 48 GREEQIVEKYEKRVDIGNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGN 107
Query: 340 P 338
P
Sbjct: 108 P 108
>UniRef50_Q53K43 Cluster: Retrotransposon protein, putative,
unclassified; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Retrotransposon protein, putative,
unclassified - Oryza sativa subsp. japonica (Rice)
Length = 512
Score = 47.6 bits (108), Expect = 2e-04
Identities = 22/51 (43%), Positives = 29/51 (56%)
Frame = -2
Query: 385 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXVFCLKPGRNYCHVGRLSHE 233
RG+ AL RL+ Y+G PPP+D V L+PG YC +G+LS E
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKE 59
>UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein L13 -
Halorubrum lacusprofundi ATCC 49239
Length = 149
Score = 47.6 bits (108), Expect = 2e-04
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = -2
Query: 520 GTNSSLCHXLRKRCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGC 341
G + R + GP++ + P +I + +RGM+P+KTE G+ AL +R Y G
Sbjct: 48 GNEEATMETYHTRAELGSDSGPYYPKRPDRIFKRAIRGMLPYKTEDGREALSNVRVYVGN 107
Query: 340 P 338
P
Sbjct: 108 P 108
>UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L13P -
Nanoarchaeum equitans
Length = 162
Score = 47.6 bits (108), Expect = 2e-04
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = -2
Query: 463 RGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 338
+GPF+ + P IL + +RGM+P KT RG+ L+ ++ Y G P
Sbjct: 65 KGPFYPKRPDNILKRVIRGMLPRKTARGRELLKNVKVYIGVP 106
>UniRef50_UPI0000EBD60B Cluster: PREDICTED: similar to ribosomal
protein L13a; n=2; Bos taurus|Rep: PREDICTED: similar to
ribosomal protein L13a - Bos taurus
Length = 112
Score = 46.0 bits (104), Expect = 5e-04
Identities = 27/93 (29%), Positives = 40/93 (43%)
Frame = -2
Query: 472 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 293
NP+ GPF F P I TV+ ++P+K + + L L+ +D +
Sbjct: 16 NPSNGPFQFWVPKHIFRHTVQDLLPYKIKHDQETLEHLKVFDKTKQMIISVQICVSEATS 75
Query: 292 XVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 194
CL G L++E GWKY+ V LE
Sbjct: 76 RFACL---------GYLTYESGWKYQVVTNTLE 99
>UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5;
Thermoproteaceae|Rep: 50S ribosomal protein L13P -
Pyrobaculum aerophilum
Length = 187
Score = 45.6 bits (103), Expect = 7e-04
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = -2
Query: 484 RCXVNPAR-GPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 338
R NP + GP R P ++ + VRGM+P K+E G++AL+RLR Y P
Sbjct: 76 RTHYNPEKAGPKVPRRPDRVFKRIVRGMLPKKSETGRSALKRLRVYMSIP 125
>UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropyrum
pernix|Rep: 50S ribosomal protein L13P - Aeropyrum
pernix
Length = 155
Score = 44.8 bits (101), Expect = 0.001
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = -2
Query: 445 RAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXVFCLKPGR 266
R P ++ VRGM+P RG+ AL RLR Y G P D +
Sbjct: 79 RTPQRLFKHAVRGMLPKNKARGRRALARLRVYVGVP---DELKGREFVRFPEADASRLSS 135
Query: 265 NYCHVGRLSHEIGWK 221
+Y +G ++ ++GWK
Sbjct: 136 HYIELGAVARQLGWK 150
>UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured
organism HF70_19B12|Rep: Ribosomal protein L13P -
uncultured organism HF70_19B12
Length = 161
Score = 44.0 bits (99), Expect = 0.002
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = -2
Query: 490 RKRCXVNPARGPFHFRAPSKILWKTVRGMIPH-KTERGKNALRRLRTYDGCP 338
RK +P +GPF R P IL +TVRGM+P+ K G+ A++ LR G P
Sbjct: 62 RKYKLNHPRKGPFFPRMPDMILKRTVRGMLPYQKKSSGRQAVKDLRVMIGTP 113
>UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1;
Arabidopsis thaliana|Rep: 60S L13 ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 61
Score = 41.9 bits (94), Expect = 0.009
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = -2
Query: 241 SHEIGWKYRDVVRKLEXXXXXXXXXXXAYEKKLKRITKDAGEKVSKATTPFTTIIQSYGY 62
+HE+GW+Y+ +V KLE +K ++ + A EK T + +++ YGY
Sbjct: 1 AHEVGWQYQGIVEKLEEKRKVKGTAYYTKKKAEMKLKRQAIEKAKAKTAVYDKVLEQYGY 60
>UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein L13 - Thermofilum
pendens (strain Hrk 5)
Length = 154
Score = 41.5 bits (93), Expect = 0.011
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = -2
Query: 472 NPA-RGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDN 323
NP RGP + + P ++ + VRGM+P + G+++L+RL Y G P + N
Sbjct: 67 NPELRGPKYPKTPDRLFKRMVRGMLPMEKTIGRDSLKRLTVYVGLPDEYRN 117
>UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6;
Methanococcales|Rep: 50S ribosomal protein L13P -
Methanococcus maripaludis
Length = 137
Score = 38.7 bits (86), Expect = 0.080
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -2
Query: 493 LRKRCXV-NPAR-GPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 338
LR R + NP + GP + R P I+ + +RGM+P+K RG A ++++ G P
Sbjct: 52 LRTRKSISNPKKMGPKYPRRPDDIVRRVIRGMLPYKKPRGVEAFKKIKIEVGVP 105
>UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3;
Sulfolobaceae|Rep: 50S ribosomal protein L13P -
Sulfolobus solfataricus
Length = 149
Score = 37.5 bits (83), Expect = 0.18
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = -2
Query: 472 NPAR-GPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 326
NP R G R+P I+ +T+RGM+P K+ +G+ L+ ++ Y G P F+
Sbjct: 68 NPYRNGIRRPRSPINIVKRTIRGMLP-KSSKGRRMLKNVKIYVGVPKEFE 116
>UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L13A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 181
Score = 36.3 bits (80), Expect = 0.43
Identities = 19/86 (22%), Positives = 36/86 (41%)
Frame = -2
Query: 472 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 293
NP +GP+ F PS +L K V+GM+ + + + ++ P +
Sbjct: 63 NPNKGPYFFSNPSSLLKKIVKGMLNKLNKSHTLLFKSVECFNDTPNRYIYNYKLFLKNSH 122
Query: 292 XVFCLKPGRNYCHVGRLSHEIGWKYR 215
+ LKP + + + + GW+ R
Sbjct: 123 KNYKLKPDSKFTKLYEILPKFGWQDR 148
>UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L13P -
Picrophilus torridus
Length = 138
Score = 35.5 bits (78), Expect = 0.74
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -2
Query: 463 RGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDN 323
+GP++ + +IL +++ M+P K G AL+R Y P +N
Sbjct: 60 KGPYYPKTADRILKRSIGDMLPKKKTHGMEALKRCMVYANVPKSLEN 106
>UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4;
Thermoprotei|Rep: 50S ribosomal protein L13P -
Sulfolobus acidocaldarius
Length = 148
Score = 34.7 bits (76), Expect = 1.3
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -2
Query: 472 NPAR-GPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 338
NP R G R P I+ +TVRGM+P K + GK R L+ Y G P
Sbjct: 66 NPYRQGIRRPRNPINIVKRTVRGMLP-KNKLGKQIYRNLKAYIGIP 110
>UniRef50_Q3AW67 Cluster: 50S ribosomal protein L13; n=12;
Bacteria|Rep: 50S ribosomal protein L13 - Synechococcus
sp. (strain CC9902)
Length = 150
Score = 33.9 bits (74), Expect = 2.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 445 RAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 332
R P +I+ K ++GM+PH G+ R+L+ Y G P
Sbjct: 96 RIPERIVEKAIKGMLPHNA-LGRQMYRKLKVYKGTEHP 132
>UniRef50_Q7V521 Cluster: 50S ribosomal protein L13; n=32;
Bacteria|Rep: 50S ribosomal protein L13 -
Prochlorococcus marinus (strain MIT 9313)
Length = 150
Score = 33.1 bits (72), Expect = 4.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 445 RAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 332
R P +I+ K ++GM+PH G+ R+L+ Y G P
Sbjct: 96 RLPERIVEKAIKGMLPHNA-LGRQLFRKLKVYRGPEHP 132
>UniRef50_A7H7V3 Cluster: Putative uncharacterized protein; n=2;
Anaeromyxobacter|Rep: Putative uncharacterized protein -
Anaeromyxobacter sp. Fw109-5
Length = 244
Score = 31.9 bits (69), Expect = 9.2
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -2
Query: 499 HXLRKRCXVNPARGP---FHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 338
H L ++ GP F S++ W TV+ + E+G A+RRLR+ G P
Sbjct: 174 HLLPTTALLDGRAGPERIFAVCTKSQVPWNTVKQAAAKELEKGDEAVRRLRSIGGLP 230
>UniRef50_Q1AU63 Cluster: 50S ribosomal protein L13; n=3;
Bacteria|Rep: 50S ribosomal protein L13 - Rubrobacter
xylanophilus (strain DSM 9941 / NBRC 16129)
Length = 143
Score = 31.9 bits (69), Expect = 9.2
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -2
Query: 445 RAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 332
+ P +IL + VRGM+P KT + L++LR Y G P
Sbjct: 95 KRPEEILRQAVRGMMP-KTRLARRQLKKLRIYAGPEHP 131
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 517,904,625
Number of Sequences: 1657284
Number of extensions: 10039354
Number of successful extensions: 22905
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 22360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22888
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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