Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311A04f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.2  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    23   2.2  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    23   2.2  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    23   2.2  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    22   2.9  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 95  TIHYHHPILWIQLGLRNYNKNKPFGCQK 12
           T + HH    ++  LRN+  +KPF C K
Sbjct: 240 TEYKHH----LEYHLRNHAGSKPFQCNK 263


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 91  MVLSPSTPSHQHPW*SS*VSFHR 159
           M + P +PS    W    VSFH+
Sbjct: 54  MYIHPDSPSTGEQWMQKVVSFHK 76


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 91  MVLSPSTPSHQHPW*SS*VSFHR 159
           M + P +PS    W    VSFH+
Sbjct: 54  MYIHPDSPSTGEQWMQKVVSFHK 76


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 345 PSYVRSLLRAFLPRSVLCGIIPLTVFH 425
           PS+  S +R+FL  +    ++P  ++H
Sbjct: 34  PSFKLSKIRSFLNITASAVLLPFAIYH 60


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
          protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 65 IQLGLRNYNKNKPFGCQK 12
          ++  LRN+  +KPF C K
Sbjct: 4  LEYHLRNHAGSKPFQCNK 21


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,020
Number of Sequences: 336
Number of extensions: 2733
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)