Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311A04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...   132   2e-32
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...   130   1e-31
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...   125   3e-30
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   3.0  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   3.9  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    25   5.2  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   9.0  

>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  132 bits (320), Expect = 2e-32
 Identities = 68/144 (47%), Positives = 82/144 (56%)
 Frame = -2

Query: 493 LRKRCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXX 314
           LRK C  NP+RG FHFRAPS+I  K VRGM+PHKT RG+ AL  L+  +G PPPFD    
Sbjct: 59  LRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKR 118

Query: 313 XXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXXXXXXXXXXAYEKKLKRI 134
                   V  LKPGR YC VGRLS E+GWKY D+V KLE            Y+ KL + 
Sbjct: 119 VVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLE--ERRKVKSAAFYQAKLAKQ 176

Query: 133 TKDAGEKVSKATTPFTTIIQSYGY 62
            K A    +K  +P    +  +GY
Sbjct: 177 KKIAS---AKEASPVNQKLSQFGY 197


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score =  130 bits (314), Expect = 1e-31
 Identities = 65/131 (49%), Positives = 77/131 (58%)
 Frame = -2

Query: 493 LRKRCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXX 314
           LRK C  NP+RG FHFRAPS+I  K VRGM+PHKT RG+ AL  L+  +G PPPFD    
Sbjct: 59  LRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKR 118

Query: 313 XXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXXXXXXXXXXAYEKKLKRI 134
                   V  LKPGR YC VGRLS E+GWKY D+V KLE            Y+ KL + 
Sbjct: 119 VVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLE--ERRKVKSAAFYQAKLAKQ 176

Query: 133 TKDAGEKVSKA 101
            K A  K + +
Sbjct: 177 KKIASAKAASS 187


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  125 bits (302), Expect = 3e-30
 Identities = 56/100 (56%), Positives = 67/100 (67%)
 Frame = -2

Query: 493 LRKRCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXX 314
           LRK C  NP+RG FHFRAPS+I  K VRGM+PHKT RG  AL+ L+  +G PPPFD    
Sbjct: 59  LRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKR 118

Query: 313 XXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 194
                   V  LKP R YC +GRLS E+GWKY+++V KLE
Sbjct: 119 LVVPAALRVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLE 158


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 360 SLLRAFLPRSVLCGIIPLTVFHRILDGAL 446
           S L AFLP+  LC +IPL    + L G L
Sbjct: 693 SSLFAFLPQLSLCMLIPLVFGKKNLPGTL 721


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 339 GHPSYVRSLLRAFLPRSVLCGIIP 410
           G+ SY+ + L+AFLP++V   + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 74  LDDGSEWCCRLRHLLTSILGDPLKFLFIGNSLNSL 178
           L D  E   R+RH   S++G+P+ + +I   ++ L
Sbjct: 408 LPDRYEEASRVRHCALSLVGEPIFYPYINEFVSML 442


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 92  WCCRLRHLLTSILGDPLKF 148
           W  RL + +TSI  +PLKF
Sbjct: 853 WALRLLYQITSIWENPLKF 871


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,077
Number of Sequences: 5004
Number of extensions: 41474
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)