Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS311A04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 128 4e-30
07_01_0071 - 522920-523063,524125-524212,524289-524677 125 2e-29
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 108 2e-24
11_04_0056 + 12942802-12942920,12943022-12943115 58 3e-09
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 31 0.56
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92... 29 1.7
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 29 1.7
10_01_0326 + 3574129-3574329,3575144-3575692,3575914-3576072,357... 27 6.9
04_03_0232 - 13049649-13052807 27 9.1
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 128 bits (308), Expect = 4e-30
Identities = 60/144 (41%), Positives = 81/144 (56%)
Frame = -2
Query: 493 LRKRCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXX 314
LRKR P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+G PPP+D
Sbjct: 63 LRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRTKR 122
Query: 313 XXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXXXXXXXXXXAYEKKLKRI 134
V L+PG YC +G+LS E+GW Y D +R+LE K+L ++
Sbjct: 123 MVIPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIRELEEKRKEKAKVAYDRRKQLAKL 182
Query: 133 TKDAGEKVSKATTPFTTIIQSYGY 62
A + + P I+ Y
Sbjct: 183 RVKAEKAAEEKLGPQLEILAPIKY 206
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 125 bits (301), Expect = 2e-29
Identities = 59/130 (45%), Positives = 76/130 (58%)
Frame = -2
Query: 493 LRKRCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXX 314
LRKR P+ GP HFRAPS+I W+TVRGMIPHKT RG+ AL L+ +DG PPP+D
Sbjct: 63 LRKRMNTKPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPPPYDRTKR 122
Query: 313 XXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXXXXXXXXXXAYEKKLKRI 134
V L+PG YC +G+LS E+GW Y D +R+LE K+L R+
Sbjct: 123 MVVPDALKVLRLQPGHKYCLLGQLSKEVGWNYHDTIRELEEKRKEKAKVAYERRKQLTRL 182
Query: 133 TKDAGEKVSK 104
A EK ++
Sbjct: 183 RVKA-EKAAE 191
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 108 bits (260), Expect = 2e-24
Identities = 46/89 (51%), Positives = 60/89 (67%)
Frame = -2
Query: 469 PARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXX 290
P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+ PP+D
Sbjct: 5 PSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPDALK 64
Query: 289 VFCLKPGRNYCHVGRLSHEIGWKYRDVVR 203
V L+PG YC +G+LS E+GW Y D +R
Sbjct: 65 VLRLQPGHKYCLLGQLSKEVGWNYYDTIR 93
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 58.4 bits (135), Expect = 3e-09
Identities = 25/56 (44%), Positives = 33/56 (58%)
Frame = -2
Query: 385 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKY 218
RG+ AL RL+ Y+G PPP+D V L+PG YC +G+LS E+GW Y
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNY 64
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 31.1 bits (67), Expect = 0.56
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -3
Query: 237 MKLDGNTVMLFVSLKXRGRARLLRELPMKRNLRGSPRMLVRRCRRRQHHSLPS 79
MK D +L VS LL+EL ++ LR ++ RCR+ HH + S
Sbjct: 92 MKEDATKQLLRVSHNHHEYKNLLKELVVQGLLRLKEPAVLLRCRKEDHHHVES 144
>04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-920508
Length = 1157
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 122 W*EGVEGDNTIHYHHPILWIQLGLRNYNKNKPFG 21
W +G++ D + HHP L++ R Y K P G
Sbjct: 1055 WWDGLQWDGLENGHHPSLYVPTHSRYYKKKLPRG 1088
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 445 RAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 326
R P +I+ VRGM+P K G+ L+ Y G P +
Sbjct: 619 RIPERIIEHAVRGMLP-KGRLGRRLFTHLKVYKGAEHPHE 657
>10_01_0326 +
3574129-3574329,3575144-3575692,3575914-3576072,
3576349-3577543,3577626-3577762,3578052-3578242,
3578888-3579218
Length = 920
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = -3
Query: 177 RLLRELPMKRNLRGSPRMLVRRCRRRQ 97
R++ EL + RN+R +P+ML+ ++R+
Sbjct: 177 RIVEELGLARNVRLTPKMLIEAIKQRK 203
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 175 PCPSSXLQAYEQHHGISIQFHGTVCLH 255
PCPS+ L+ Y H IS+Q LH
Sbjct: 763 PCPSNCLKPYSAHCYISVQDEMQTNLH 789
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,200,657
Number of Sequences: 37544
Number of extensions: 289322
Number of successful extensions: 659
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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