Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311A04f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   4e-05
SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)           28   5.4  
SB_42304| Best HMM Match : NHL (HMM E-Value=0)                         27   7.1  

>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = -2

Query: 406 MIPHKTERGKNALRRLRTYDGCPPPFD 326
           MIPHKT++G  A+ R++ +DG PPP+D
Sbjct: 1   MIPHKTKKGTEAMNRMKVFDGVPPPYD 27


>SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -3

Query: 240  PMKLDGNTVMLFVSLKXRGRARLL--RELPMKRNLRGSPRMLVRR 112
            P K +GNT    V ++  GR + L  R +P++ N  G P+ LV+R
Sbjct: 1114 PGKAEGNTDKRIVPVENNGRIKQLDKRIIPVENN--GRPKQLVKR 1156


>SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)
          Length = 676

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 250 LHDSNYGQVSDRRHVEQQALQHVDGYQREEGTH-HMY 357
           +H S + +V  ++H+E +A  H   Y R +  H H+Y
Sbjct: 319 IHVSVFRRVLHQKHIEVEAYNHPHVYSRVKSNHPHVY 355


>SB_42304| Best HMM Match : NHL (HMM E-Value=0)
          Length = 1279

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 123  LVRRCRRRQHHSLPSSNPMD 64
            LV+R    QHH+LPS +P D
Sbjct: 1192 LVKRIAGMQHHNLPSPHPED 1211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,232,220
Number of Sequences: 59808
Number of extensions: 319809
Number of successful extensions: 1443
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)