Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311A04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   140   4e-34
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   140   4e-34
U70857-6|AAD31051.1|  189|Caenorhabditis elegans Hypothetical pr...    30   0.87 
AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical ...    30   1.2  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   2.0  
U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical p...    28   4.7  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  140 bits (340), Expect = 4e-34
 Identities = 64/145 (44%), Positives = 86/145 (59%)
 Frame = -2

Query: 493 LRKRCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXX 314
           LRKRC +NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +     
Sbjct: 59  LRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TK 117

Query: 313 XXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXXXXXXXXXXAYEKKLKRI 134
                    F L+P R +C VGRLSHE+GW+++DVV KLE             +KK+ ++
Sbjct: 118 SLHAPSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKL 177

Query: 133 TKDAGEKVSKATTPFTTIIQSYGYN 59
              A +  +     +  II++ GYN
Sbjct: 178 AVQAKKNAAPKIAQYQKIIEALGYN 202


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  140 bits (340), Expect = 4e-34
 Identities = 64/145 (44%), Positives = 86/145 (59%)
 Frame = -2

Query: 493 LRKRCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXX 314
           LRKRC +NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +     
Sbjct: 59  LRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TK 117

Query: 313 XXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXXXXXXXXXXAYEKKLKRI 134
                    F L+P R +C VGRLSHE+GW+++DVV KLE             +KK+ ++
Sbjct: 118 SLHAPSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKL 177

Query: 133 TKDAGEKVSKATTPFTTIIQSYGYN 59
              A +  +     +  II++ GYN
Sbjct: 178 AVQAKKNAAPKIAQYQKIIEALGYN 202


>U70857-6|AAD31051.1|  189|Caenorhabditis elegans Hypothetical
           protein C10G8.3 protein.
          Length = 189

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 175 PCPSSXLQAYEQHHGISIQFHGTVCLHD 258
           PCP       E+ HGI++Q  G  CLH+
Sbjct: 143 PCPIGQTIVREKIHGITVQLLGKRCLHN 170


>AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical
           protein F13C5.1 protein.
          Length = 437

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 157 RQLS*QPCPSSXLQAYEQHHGISIQFHGTVCLHDSNY 267
           R+ S   C S  L  +E HHGI +   G + L D++Y
Sbjct: 322 RKRSSAVCSSGSLTHFESHHGIKLLTIGVLPLDDNSY 358


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/56 (28%), Positives = 20/56 (35%)
 Frame = +1

Query: 211 HHGISIQFHGTVCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*EHS 378
           HH      H     H   +G V  R H E     H   +  E GTHH +     H+
Sbjct: 381 HHEHKEGEHHEHAAHHDEHG-VHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHA 435



 Score = 27.9 bits (59), Expect = 4.7
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
 Frame = +1

Query: 199 AYEQHHGISIQFHGTVCLHDS--NYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*E 372
           A+  HHG     HG    H S  ++G   +  H       H  G+    G HH +  S  
Sbjct: 537 AHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHH--GHHGSHGVHHGHHESHG 594

Query: 373 HSCHA 387
           H  HA
Sbjct: 595 HGHHA 599


>U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical
           protein C50E3.2 protein.
          Length = 168

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 188 LXFKLTNNITVFPSNFMGQSAYMTVITARFQTE 286
           L   L NNI VFPSN + +++ MT+   R +T+
Sbjct: 23  LNVALENNILVFPSN-ISEASGMTLFHGRIETK 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,909,201
Number of Sequences: 27780
Number of extensions: 237275
Number of successful extensions: 527
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)