Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS311A04f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC) ri...   122   1e-28
At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA) si...   122   1e-28
At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB) si...   122   1e-28
At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)         120   4e-28
At5g19400.1 68418.m02312 expressed protein                             29   1.9  
At1g78630.1 68414.m09164 ribosomal protein L13 family protein si...    27   5.8  
At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein co...    27   5.8  

>At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC)
           ribosomal protein L13a -Lupinus luteus,PID:e1237871
          Length = 206

 Score =  122 bits (295), Expect = 1e-28
 Identities = 58/130 (44%), Positives = 78/130 (60%)
 Frame = -2

Query: 493 LRKRCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXX 314
           LRKR    P+ GP HFRAPSKI W+TVRGMIPHKT+RG  AL RL+ ++G PPP+D    
Sbjct: 63  LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKR 122

Query: 313 XXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXXXXXXXXXXAYEKKLKRI 134
                   V  L+ G  YC +GRLS E+GW + D +++LE             +K+L ++
Sbjct: 123 MVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYERKKQLNKL 182

Query: 133 TKDAGEKVSK 104
              A EKV++
Sbjct: 183 RTKA-EKVAE 191


>At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA)
           similar to ribosomal protein L13A GB:O49885 [Lupinus
           luteus]
          Length = 206

 Score =  122 bits (295), Expect = 1e-28
 Identities = 58/130 (44%), Positives = 78/130 (60%)
 Frame = -2

Query: 493 LRKRCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXX 314
           LRKR    P+ GP HFRAPSKI W+TVRGMIPHKT+RG NAL RL+ ++G P P+D    
Sbjct: 63  LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKR 122

Query: 313 XXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXXXXXXXXXXAYEKKLKRI 134
                   V  L+ G  YC +GRLS E+GW + D +++LE             +K+L ++
Sbjct: 123 MVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLSKL 182

Query: 133 TKDAGEKVSK 104
              A EKV++
Sbjct: 183 RAKA-EKVAE 191


>At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB)
           similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from
           [Rattus norvegicus]
          Length = 206

 Score =  122 bits (294), Expect = 1e-28
 Identities = 58/130 (44%), Positives = 78/130 (60%)
 Frame = -2

Query: 493 LRKRCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXX 314
           LRKR    P+ GP HFRAPSKI W+TVRGMIPHKT+RG  AL RL+ ++G PPP+D    
Sbjct: 63  LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKR 122

Query: 313 XXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXXXXXXXXXXAYEKKLKRI 134
                   V  L+ G  YC +GRLS E+GW + D +++LE             +K+L ++
Sbjct: 123 MVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLTKL 182

Query: 133 TKDAGEKVSK 104
              A EKV++
Sbjct: 183 RAKA-EKVAE 191


>At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)
          Length = 206

 Score =  120 bits (290), Expect = 4e-28
 Identities = 58/130 (44%), Positives = 77/130 (59%)
 Frame = -2

Query: 493 LRKRCXVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXX 314
           LRKR    P+ GP HFRAPSKI W+TVRGMIPHKT+RG  AL RL+ Y+G P P+D    
Sbjct: 63  LRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKR 122

Query: 313 XXXXXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEXXXXXXXXXXXAYEKKLKRI 134
                   V  L+ G  YC +GRLS E+GW + D +++LE             +K+L ++
Sbjct: 123 MVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLNKL 182

Query: 133 TKDAGEKVSK 104
              A EKV++
Sbjct: 183 RVKA-EKVAE 191


>At5g19400.1 68418.m02312 expressed protein
          Length = 1093

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = +2

Query: 128  LGDPLKFLFIGNSLNSLALPLXFKLTNNITVFPSNFMGQSAYMTVITARFQTEDT*SSRH 307
            L  P  F F G  + +  +   F    N      NF+ ++   T +  ++Q + T SSRH
Sbjct: 1000 LNGPANFPFPGKQVPTSQVQADFPYFQNPQ--KDNFVDKNHQSTQLPEQYQGQSTWSSRH 1057

Query: 308  YNTSTV 325
            ++T+ V
Sbjct: 1058 FDTAHV 1063


>At1g78630.1 68414.m09164 ribosomal protein L13 family protein
           similar to ribosomal protein L13 GI:170132 from
           [Spinacia oleracea]
          Length = 241

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 445 RAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 326
           R P +I+   VRGM+P K   G+     L+ Y G   P +
Sbjct: 185 RIPERIVEHAVRGMLP-KGRLGRALFNHLKVYKGPDHPHE 223


>At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein
           contains Pfam profiles: PF02551 acyl-CoA thioesterase,
           PF00027 cyclic nucleotide-binding domain
          Length = 427

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 457 PFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGC 341
           P   + PS  L K  + ++P +  +G   +R  +T+DGC
Sbjct: 14  PLLQKLPSSSLKKIAQVVVPKRYGKGDYVVREDQTWDGC 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,346,796
Number of Sequences: 28952
Number of extensions: 226455
Number of successful extensions: 546
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)