Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H12f
         (331 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0491 + 29470575-29471351,29471574-29471806,29472697-294728...    26   8.3  

>02_05_0491 +
           29470575-29471351,29471574-29471806,29472697-29472856,
           29473149-29473394,29473492-29473628,29473874-29474207,
           29474283-29474444,29474717-29474791,29474866-29474966,
           29475042-29475111,29475210-29475266,29475357-29475418,
           29475505-29475577,29475663-29475884
          Length = 902

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -2

Query: 279 IDFSVISGLLSSSNKYNNRNDGKAMKINV 193
           +++SV SGL  +S KY++RN    +K N+
Sbjct: 505 VEYSV-SGLTDASEKYSSRNLSAPIKANL 532


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,958,156
Number of Sequences: 37544
Number of extensions: 32566
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)