Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H12f
         (331 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75533-6|CAA99819.1|  378|Caenorhabditis elegans Hypothetical pr...    26   5.5  
U41039-5|AAL11488.1|  357|Caenorhabditis elegans Synapse defecti...    26   7.3  
U41039-4|AAL11489.1|  452|Caenorhabditis elegans Synapse defecti...    26   7.3  
U41039-3|AAK68627.2|  537|Caenorhabditis elegans Synapse defecti...    26   7.3  
AF039042-9|AAC48245.1|  431|Caenorhabditis elegans Hypothetical ...    25   9.7  

>Z75533-6|CAA99819.1|  378|Caenorhabditis elegans Hypothetical
           protein C54G4.7 protein.
          Length = 378

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -2

Query: 324 LLKSEYSYLQYH*CPIDFSVISGLLSSSNKYNNRNDG 214
           +L  +++ L+++  PID S+    L+  ++Y  RN G
Sbjct: 294 ILMDDFTSLEFYPTPIDTSLCHVFLADQDQYVLRNQG 330


>U41039-5|AAL11488.1|  357|Caenorhabditis elegans Synapse defective
           protein 9, isoforma protein.
          Length = 357

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 264 ISGLLSSSNKYNNRNDGKAMKINVK 190
           +S  L+SSN +NN N+  A+  N++
Sbjct: 68  VSSALASSNGHNNNNNNHAVNNNLR 92


>U41039-4|AAL11489.1|  452|Caenorhabditis elegans Synapse defective
           protein 9, isoformd protein.
          Length = 452

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 264 ISGLLSSSNKYNNRNDGKAMKINVK 190
           +S  L+SSN +NN N+  A+  N++
Sbjct: 163 VSSALASSNGHNNNNNNHAVNNNLR 187


>U41039-3|AAK68627.2|  537|Caenorhabditis elegans Synapse defective
           protein 9, isoformc protein.
          Length = 537

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 264 ISGLLSSSNKYNNRNDGKAMKINVK 190
           +S  L+SSN +NN N+  A+  N++
Sbjct: 146 VSSALASSNGHNNNNNNHAVNNNLR 170


>AF039042-9|AAC48245.1|  431|Caenorhabditis elegans Hypothetical
           protein ZK697.2 protein.
          Length = 431

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 285 CPIDFSVISGLLSSSNKYNNRND 217
           CP D S +  L   + +Y NRND
Sbjct: 202 CPFDLSDMKPLSYDTYRYKNRND 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,788,116
Number of Sequences: 27780
Number of extensions: 37299
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)