Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H10f
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.16 |tom22||mitochondrial TOM complex subunit Tom22|Schi...    27   1.5  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   4.5  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   7.8  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    25   7.8  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   7.8  

>SPAC17H9.16 |tom22||mitochondrial TOM complex subunit
           Tom22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 187 GIGKLFSFGGLGVWTL-VDALLIGI 116
           G+ KL  FGG  +W +   ALL+G+
Sbjct: 80  GLSKLAQFGGKSMWVISTSALLLGV 104


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 82  YIKTHQLVLNGVFQLTMHPLGS 147
           ++    LV NGVF+L  HP+ S
Sbjct: 277 FLLRSSLVFNGVFELAPHPMYS 298


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 257 CTPTSP*CPGASYFLKE 307
           C PTS  CP   YF+K+
Sbjct: 661 CHPTSEPCPPCPYFVKK 677


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 94  HQLVLNGVFQLTMHPLGSTLQGH 162
           H L LN  F     P G TL+GH
Sbjct: 131 HNLSLNKAFIKVEKPKGKTLKGH 153


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 264 QRVPDVQEHLTFLRNRLFPKH 326
           + VP   + LTF+RN+ FP H
Sbjct: 313 ESVPLALKSLTFIRNQKFPFH 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,718,306
Number of Sequences: 5004
Number of extensions: 31627
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)