Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H10f
         (475 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35368| Best HMM Match : UIM (HMM E-Value=6.3e-06)                   31   0.49 
SB_11987| Best HMM Match : OTU (HMM E-Value=1.1e-24)                   30   0.85 
SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_27661| Best HMM Match : Ubie_methyltran (HMM E-Value=0.58)          27   7.9  
SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)              27   7.9  

>SB_35368| Best HMM Match : UIM (HMM E-Value=6.3e-06)
          Length = 362

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = -1

Query: 361 YLTNCTVSDDVICLG 317
           Y+TNCTV ++V+CLG
Sbjct: 129 YITNCTVKEEVLCLG 143



 Score = 30.7 bits (66), Expect = 0.65
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 474 KNFXKSSMCRFCYQTDKWEHRCEQK 400
           +NF K+  CR+C+QT +  + C +K
Sbjct: 90  RNFTKTFSCRYCFQTPEESYHCIKK 114


>SB_11987| Best HMM Match : OTU (HMM E-Value=1.1e-24)
          Length = 1142

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 87  KDPSAGPKWCIPINNASTRVHTPRPPKLKSLPMP 188
           KDP A P   +P+ +  T V  P PP   S+P P
Sbjct: 427 KDPKAFP--ALPVRSGGTPVPQPPPPAADSIPTP 458


>SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1555

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 112  GVFQLTMHPLGSTLQGHQN*KVYQCLLANDQDKSGQLQNL 231
            G++ L+M PL ++LQG  N  + QC  A+D   +G +  +
Sbjct: 1055 GLYALSMQPLLTSLQGACN--IKQCWFADDASGAGSVSEI 1092


>SB_27661| Best HMM Match : Ubie_methyltran (HMM E-Value=0.58)
          Length = 388

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 255 AVPQRVPDVQEHLTFLRNRLFPK 323
           A+ Q+VPD Q     +R+ LFPK
Sbjct: 297 AIKQQVPDTQSIALLIRDDLFPK 319


>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
          Length = 1168

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 349 CTVSDDVICLGKRRFLKKVRCSWTS 275
           CTV D + C G+RRFL + +C  +S
Sbjct: 102 CTVLDGIECYGERRFLAE-KCPVSS 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,487,000
Number of Sequences: 59808
Number of extensions: 229834
Number of successful extensions: 474
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)