Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H10f
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003740-5|AAL08031.1|  195|Caenorhabditis elegans Hypothetical ...   111   2e-25
L14745-13|AAR25658.1|  210|Caenorhabditis elegans Hypothetical p...    57   7e-09
AL161712-16|CAC35892.1|  329|Caenorhabditis elegans Hypothetical...    56   1e-08
U28944-12|AAA68371.2|  363|Caenorhabditis elegans Hypothetical p...    27   5.2  
AL032661-3|CAA21756.1|  163|Caenorhabditis elegans Hypothetical ...    27   6.9  
CU457737-8|CAM36329.1|  811|Caenorhabditis elegans Hypothetical ...    27   9.1  
AC006833-4|AAF60948.1|  125|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AF003740-5|AAL08031.1|  195|Caenorhabditis elegans Hypothetical
           protein C41D11.9 protein.
          Length = 195

 Score =  111 bits (268), Expect = 2e-25
 Identities = 48/97 (49%), Positives = 63/97 (64%)
 Frame = -1

Query: 370 SKYYLTNCTVSDDVICLGKRRFLKKVRCSWTSGTRWXXXXXXXXXXXXXXADRFYLGHWQ 191
           +K  +T C+    VIC+G+R F K++ C+W+SG  W              ADRFYLG W+
Sbjct: 99  TKLLVTKCSAHSSVICMGQRNFYKRIPCNWSSGYSWTKTMILSVVLGGFGADRFYLGLWK 158

Query: 190 EGIGKLFSFGGLGVWTLVDALLIGIHHLGPADGSLYI 80
             IGKLFSFGGLGVWTLVD +LI + ++ P DGS+YI
Sbjct: 159 SAIGKLFSFGGLGVWTLVDVVLIAVGYIKPYDGSMYI 195


>L14745-13|AAR25658.1|  210|Caenorhabditis elegans Hypothetical
           protein C02F5.13 protein.
          Length = 210

 Score = 56.8 bits (131), Expect = 7e-09
 Identities = 30/87 (34%), Positives = 40/87 (45%)
 Frame = -1

Query: 349 CTVSDDVICLGKRRFLKKVRCSWTSGTRWXXXXXXXXXXXXXXADRFYLGHWQEGIGKLF 170
           C V   + C G R F K   C   +G  +               DRF LG+    +GKL 
Sbjct: 118 CRVLPCIECHGPRTFTKSTPCIIYNGHYFLTTLLYSIFLGVVAVDRFCLGYSAMAVGKLM 177

Query: 169 SFGGLGVWTLVDALLIGIHHLGPADGS 89
           + GG G+W +VD  L+ +  LGPAD S
Sbjct: 178 TLGGFGIWWIVDIFLLVLGVLGPADDS 204


>AL161712-16|CAC35892.1|  329|Caenorhabditis elegans Hypothetical
           protein Y66D12A.21 protein.
          Length = 329

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
 Frame = -1

Query: 349 CTVSDDVICLGKRRF-----LKKVRCSWTSGTRWXXXXXXXXXXXXXXADRFYLGHWQEG 185
           C  ++ + C+GK +F          C + +   +               DR YLG++  G
Sbjct: 57  CETAEHIKCVGKDQFGIFNRTVPSACHYGAHVSYTTTVLLSIFLGFFGIDRIYLGYYALG 116

Query: 184 IGKLFSFGGLGVWTLVDALLIGIHHLGPADGSLY 83
           + K+FS GGL V+ LVD +LI +  LGPADG+ Y
Sbjct: 117 LIKMFSLGGLFVFWLVDIILISLQLLGPADGTAY 150


>U28944-12|AAA68371.2|  363|Caenorhabditis elegans Hypothetical
           protein C18A3.2 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 199 HWQEGIGKLFSFGGLGVWTLVDALLIGIHH 110
           HW   +  LF   G+G++ ++ + LIG HH
Sbjct: 335 HWISLVKSLFVAAGIGIFVIIKS-LIGEHH 363


>AL032661-3|CAA21756.1|  163|Caenorhabditis elegans Hypothetical
           protein Y73F4A.3 protein.
          Length = 163

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 120 PINNASTRVHTPRPPKLKSLPMPSCQ 197
           PINN +  VHT RP ++ ++    C+
Sbjct: 138 PINNGNMGVHTSRPDQVNNVCASQCR 163


>CU457737-8|CAM36329.1|  811|Caenorhabditis elegans Hypothetical
           protein C52D10.12 protein.
          Length = 811

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 120 PINNASTRVHTPRPPKLKSLPMP 188
           P+++ ST + T RPPK   LP+P
Sbjct: 180 PLDDISTWLTTERPPKEYFLPLP 202


>AC006833-4|AAF60948.1|  125|Caenorhabditis elegans Hypothetical
           protein ZK616.3 protein.
          Length = 125

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 349 CTVSDDVICLGKRRFLKKVRCSW 281
           C V D+V+ +GK+ F + ++  W
Sbjct: 3   CHVKDEVLYIGKKEFEEPIKSEW 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,501,635
Number of Sequences: 27780
Number of extensions: 175082
Number of successful extensions: 348
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)