Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H10f
         (475 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   3.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.9  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 172 FSFGGLGVWTLVDALLIGIHHLGPADGSLYI 80
           F++GG+GV  L   +L G   LG +  ++++
Sbjct: 561 FTWGGIGVVVLFAVVLAGATCLGSSIKAMWL 591


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 175 VYQCLLANDQDKSGQLQNLLKL 240
           +YQC + NDQ+ S Q    LKL
Sbjct: 367 MYQCFVRNDQE-SAQATAELKL 387


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 295 VRCSWTSGTRW 263
           VRCS  SG RW
Sbjct: 21  VRCSAASGLRW 31


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 93  PSAGPKWCIPINNA 134
           P+  P+WC+P   A
Sbjct: 481 PTLLPQWCLPPREA 494


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,410
Number of Sequences: 438
Number of extensions: 2299
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)