Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H10f
         (475 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR...    28   2.8  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    27   4.9  
At2g31530.1 68415.m03852 secY family protein low similarity to S...    27   6.5  

>At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1025

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 373 LSKYYLTNCTVSDDVI-CLGKRRFLKKVRCSWTSGTR 266
           L +  L  CT  + +  C+GKR  LKK++ S+  G R
Sbjct: 677 LEELLLEQCTRLEGIPECIGKRSTLKKLKLSYRGGRR 713


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 93  PSAGPKWCIPINNASTRVHTPRPPKLKSLP 182
           P++ P    P+++  + VH P+PPK    P
Sbjct: 449 PASSPPTSPPVHSTPSPVHKPQPPKESPQP 478


>At2g31530.1 68415.m03852 secY family protein low similarity to
           SP|P31159 Preprotein translocase secY subunit
           {Synechococcus sp}; contains Pfam profile PF00344:
           eubacterial secY protein
          Length = 556

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
 Frame = +1

Query: 19  YSDFY*GKLH*CSN----IKLNLVKYIKTHQLVLNGVFQLTMHPLGST-------LQGHQ 165
           Y  F  G +  CS+    IKL+L +   + Q++ + + Q+  H L S        L GH+
Sbjct: 168 YLSFVSGSVGECSHFGAEIKLSLFQLGLSPQIIASIIMQVLCHVLPSLVKLRKEGLDGHE 227

Query: 166 N*KVYQCLLA 195
             K Y C++A
Sbjct: 228 KIKSYMCMVA 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,902,136
Number of Sequences: 28952
Number of extensions: 167020
Number of successful extensions: 335
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)