Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H09f
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    69   2e-13
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    27   0.48 
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    25   1.9  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    24   4.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   4.5  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    24   5.9  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    23   7.9  
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2...    23   7.9  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 68.5 bits (160), Expect = 2e-13
 Identities = 30/67 (44%), Positives = 47/67 (70%)
 Frame = +2

Query: 71  KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 250
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG++ ++MGKNTM+R+A++  +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 251 DNNPALE 271
           ++ P LE
Sbjct: 68  NDMPELE 74


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 0.48
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 267 RAGLLSRWSLMALRIIVFFPMSTILEPR 184
           +A     W LM + +++F  +  ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 119 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA 265
           K  IVGA NVGS     + +S   + IV++  N   +KA  + +D N A
Sbjct: 22  KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 120 FGYSSKSWMILTK*LDFQVALSSLP 46
           F Y++K+W ++ K L  QV    +P
Sbjct: 317 FAYATKTWHLIEKNLPTQVGFLPIP 341


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 112  LVQELDDLNEVVRLPSSLVLPTHPG 38
            L QE+  L   +RLP+ L  P++ G
Sbjct: 931  LTQEITQLGSNMRLPTKLTRPSNDG 955


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 214 KHYDAQSHQRPPGQQS-SPRGGARYPI 291
           KH D  +HQ PP + + S + G+  PI
Sbjct: 166 KHDDTNNHQIPPPKPNFSSKAGSSSPI 192


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 201 CSWEKTL*CAKPSKTTWTTIQPS 269
           CS EKT  C++  K+  T+ +PS
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS 286


>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = +2

Query: 206 MGKNTMMRKAIKDHLD 253
           +GK+T++++ +KDH D
Sbjct: 29  VGKSTLLKRLLKDHGD 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,433,074
Number of Sequences: 5004
Number of extensions: 25904
Number of successful extensions: 60
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)