Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310H09f
(309 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 82 1e-16
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 82 1e-16
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 82 1e-16
11_01_0033 - 251730-251855,252068-252144,252228-252318,252644-25... 33 0.046
12_01_0032 - 266954-267079,267204-267245,267290-267366,267450-26... 32 0.080
06_01_0179 - 1388602-1389572,1390060-1390129,1390346-1390439,139... 28 1.7
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 27 2.3
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 27 2.3
06_01_0007 + 130582-131544,132187-132264,132615-132732,133228-13... 27 3.0
06_03_0546 + 21988896-21989009,21989039-21989422,21989475-21989699 26 5.2
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549... 26 5.2
01_06_1399 - 37033066-37033263,37033603-37033673,37033763-370339... 26 5.2
05_01_0143 - 944169-947273 26 6.9
09_04_0659 + 19282366-19282584,19282668-19282759,19282868-192829... 25 9.2
06_01_0601 + 4337575-4340149,4340566-4340978 25 9.2
06_01_0213 + 1628974-1629339,1629441-1629590,1630935-1631095,163... 25 9.2
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847... 25 9.2
02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300 25 9.2
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 81.8 bits (193), Expect = 1e-16
Identities = 41/69 (59%), Positives = 48/69 (69%)
Frame = +2
Query: 50 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 229
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 230 KAIKDHLDN 256
+ IK H DN
Sbjct: 64 RCIKVHADN 72
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 81.8 bits (193), Expect = 1e-16
Identities = 41/69 (59%), Positives = 48/69 (69%)
Frame = +2
Query: 50 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 229
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 230 KAIKDHLDN 256
+ IK H DN
Sbjct: 64 RCIKVHADN 72
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 81.8 bits (193), Expect = 1e-16
Identities = 41/69 (59%), Positives = 48/69 (69%)
Frame = +2
Query: 50 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 229
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 230 KAIKDHLDN 256
+ IK H DN
Sbjct: 64 RCIKVHADN 72
>11_01_0033 -
251730-251855,252068-252144,252228-252318,252644-252704,
252800-252858,252955-253045,253238-253406,253760-253787
Length = 233
Score = 33.1 bits (72), Expect = 0.046
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 8 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 187
K R+ TLS+ ++ K I ++ Y ++ DN+ +Q+++ +R L+
Sbjct: 3 KSKRNRPVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLK 62
Query: 188 GSS-IVLMGKNTM 223
SS I L GK M
Sbjct: 63 SSSRIFLAGKKVM 75
>12_01_0032 -
266954-267079,267204-267245,267290-267366,267450-267540,
267864-267924,268021-268079,268176-268266,268481-268698,
268818-268824,269013-269148,270064-270307
Length = 383
Score = 32.3 bits (70), Expect = 0.080
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 20 SPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS- 196
S TLS+ ++ K I ++ Y ++ DN+ +Q+++ +R L+ SS
Sbjct: 143 SSAVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLKSSSR 202
Query: 197 IVLMGKNTM 223
I L GK M
Sbjct: 203 IFLAGKKVM 211
>06_01_0179 -
1388602-1389572,1390060-1390129,1390346-1390439,
1390587-1390687,1391152-1391220,1391328-1391482,
1392193-1392241,1392611-1392739,1392825-1393580,
1394711-1394902
Length = 861
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 155 QQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEGG 277
QQ QQ++ + S + G A DH++NN A++GG
Sbjct: 728 QQQQQLQHAPANSGLASGGTAITGSAASGDHMNNNGAVKGG 768
>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 113 YPKCFI--VGADNVGSQQMQQIRISLRGSSIV 202
Y KC I VG DN+ Q MQQ R SL I+
Sbjct: 1292 YTKCLIISVGRDNIPWQWMQQNRTSLETLEIL 1323
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 71 KSNYFVKIIQLLDEYPKCF 127
+++Y VKII+LL EY CF
Sbjct: 68 RADYKVKIIELLKEYVDCF 86
>06_01_0007 +
130582-131544,132187-132264,132615-132732,133228-133271,
133389-133448,133536-133588,133671-133837,133963-134167,
134989-135046,135225-135281,135363-135608,135938-136002,
136090-136158,136238-136331,136467-136607,137159-137304,
137452-138110,138222-138335,138406-138560
Length = 1163
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 214 KHYDAQSHQRPPGQQSSPRGGARYPI 291
K D SHQ P QS PRG +PI
Sbjct: 19 KEGDDGSHQDTPTLQSPPRGSDAHPI 44
>06_03_0546 + 21988896-21989009,21989039-21989422,21989475-21989699
Length = 240
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 199 RAHGKKHYDAQSHQRPPGQQSSPRGGARYPIRP 297
R KKH ++ H PP +PR PI P
Sbjct: 72 RKKKKKHNKSKHHHTPPPPSPTPRPSPPSPICP 104
>03_02_0859 -
11853928-11854138,11854225-11854683,11854760-11854991,
11855064-11855187,11855276-11855960,11856429-11856735,
11856832-11858188
Length = 1124
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/57 (17%), Positives = 30/57 (52%)
Frame = +2
Query: 119 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEGGPGTQ 289
+ ++G + ++ Q+ +++ +S L+G+ ++R + +++ N L G G +
Sbjct: 622 RTLVIGVRELSQEEFQEWQMAYEKASTALLGRGGLLR-GVAANIEQNLCLLGASGIE 677
>01_06_1399 -
37033066-37033263,37033603-37033673,37033763-37033910,
37034407-37034504,37034748-37034864,37035025-37035103,
37035179-37035298,37035465-37035587,37036016-37036058,
37036157-37036470
Length = 436
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 168 RSVSRYVAPVSCSWEKTL*CAKPSKTTWTTIQPSRGGPVPNSP 296
R+ SR AP + W + PS+ +PS P P SP
Sbjct: 22 RAASRAAAPAALLWRRLRGLEHPSRWPERLGRPSVARPRPGSP 64
>05_01_0143 - 944169-947273
Length = 1034
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 212 KNTMMRKAIKDHLDNNPALEGGPGTQFA 295
+NT + K++ + + PAL GPG ++
Sbjct: 345 ENTELEKSLHELEEEKPALNSGPGESYS 372
>09_04_0659 +
19282366-19282584,19282668-19282759,19282868-19282958,
19283393-19283512,19283638-19283730,19283795-19283933,
19284060-19284141,19284229-19284361,19285024-19286010
Length = 651
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +1
Query: 163 AADPYLATWLQYRAHGKKHYDAQSHQRPPGQQSSPRGGARYPI 291
AAD WL + AH Y + + G S P G P+
Sbjct: 470 AADRKHQPWLVFAAHRPLGYSSNEYYAREGSFSEPMGRTLQPL 512
>06_01_0601 + 4337575-4340149,4340566-4340978
Length = 995
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 308 RLTIGRIGYRAPPRGLDCCP 249
RL G +GY AP GL C P
Sbjct: 847 RLLQGSVGYIAPEYGLGCNP 866
>06_01_0213 +
1628974-1629339,1629441-1629590,1630935-1631095,
1631178-1631892,1632045-1632091,1632295-1632316
Length = 486
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 9 NFIEVPTPHYPGW 47
N VP+P+YPGW
Sbjct: 215 NAFLVPSPYYPGW 227
>04_03_0977 +
21381857-21383757,21384299-21384458,21384669-21384717,
21385117-21385169
Length = 720
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 214 KHYDAQSHQRPPGQQSSPRGGARY 285
+ YD + PPG + RGG R+
Sbjct: 186 RSYDDEDDDGPPGYRRERRGGGRF 209
>02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300
Length = 623
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 161 MQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALE 271
M R+++RG V ++ + +KDHLD+ +E
Sbjct: 562 MNSCRLTMRGCRDVAQQMPDLVVEVMKDHLDDEGEME 598
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,153,846
Number of Sequences: 37544
Number of extensions: 199517
Number of successful extensions: 567
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -