Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310H09f
(309 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 92 1e-19
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 0.77
SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08) 28 1.8
SB_11480| Best HMM Match : LCCL (HMM E-Value=7.5) 27 2.4
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_6695| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_40918| Best HMM Match : DMAP_binding (HMM E-Value=0.48) 27 4.1
SB_56829| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 26 7.2
SB_33607| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06) 26 7.2
SB_15230| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_4861| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0063) 26 7.2
SB_4823| Best HMM Match : HTH_1 (HMM E-Value=4.5e-18) 26 7.2
SB_891| Best HMM Match : DUF1098 (HMM E-Value=0.47) 26 7.2
SB_17030| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 91.9 bits (218), Expect = 1e-19
Identities = 43/58 (74%), Positives = 48/58 (82%)
Frame = +2
Query: 98 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALE 271
Q LDEYPK F+VG DNVGS+QMQ IR SLRG VLMGKNTM+RKAI+ HL+NNP LE
Sbjct: 1 QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLE 58
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 29.1 bits (62), Expect = 0.77
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 112 VPKMFHRGCR*RGLATDAADPYLAT-WLQYRAHGKKHYDA 228
VPKMFH RG+ T+A P + T +L+ R G++ +A
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRRGLNA 3895
>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
Length = 1011
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 157 TDAADPYLATWLQYRAHGKKHYDAQSHQRPPGQQSSPRGGARYPIRPI 300
T A+P L + +++ G+ DA P +SP + P +PI
Sbjct: 482 TTGANPKLDAYQRWKLSGRVEMDATPEVSPKKTDTSPTSQSENPTKPI 529
>SB_11480| Best HMM Match : LCCL (HMM E-Value=7.5)
Length = 152
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 167 QIRISLRGSSIVLMGKNTMMRKAIKDHLDNNP 262
Q+R L S +L+G NT+++ A+ D L P
Sbjct: 23 QVRPGLTALSTILLGANTVIQAALPDILAKTP 54
>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 212 KNTMMRKAIKDHLDNNPALEGGP 280
K T++RK +K HLDN P L P
Sbjct: 168 KVTIVRKELKSHLDNLPDLSKLP 190
>SB_6695| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 26.6 bits (56), Expect = 4.1
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +1
Query: 97 PTLGRVPKMFHRGCR*RGLATDAADPYLATWLQYRAH---GKKHYDAQSHQRPPGQQSS 264
P R+ KMF G + RG++ D + T H KK QS Q+ G +SS
Sbjct: 154 PDYSRLRKMFQNGLKKRGVSDDGRSVHF-TSPPANGHDDDSKKKKTVQSKQKAKGTKSS 211
>SB_40918| Best HMM Match : DMAP_binding (HMM E-Value=0.48)
Length = 366
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2
Query: 284 YRAPPRGLDCCPG 246
YRAPPRG C PG
Sbjct: 18 YRAPPRGRRCNPG 30
>SB_56829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 202 AHGKKHYDAQSHQRPPGQQSSPRGGARYPI 291
A HY+ + RP Q+S PRGG +P+
Sbjct: 216 AQSSVHYNYPA-MRPQPQRSMPRGGRPWPM 244
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 143 NVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIK 241
+VGS + QQ+R + SS V G+N +RK ++
Sbjct: 1257 HVGSGRNQQVRQPVEVSSHVGSGRNQQVRKHVE 1289
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 137 ADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIK 241
+ +VGS + QQ+R + SS V G+N +R +K
Sbjct: 1309 SSHVGSGRNQQVRKHVEVSSHVGSGRNQQVRHPLK 1343
>SB_33607| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
Length = 256
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/47 (25%), Positives = 18/47 (38%)
Frame = +3
Query: 129 SWVPITWARNRCSRSVSRYVAPVSCSWEKTL*CAKPSKTTWTTIQPS 269
+W+ W R RC S R + P S + P W +P+
Sbjct: 197 AWLAFAWKRYRCHGSQVRLIKPPSTIVDGRSRAHAPFINYWPLFEPT 243
>SB_15230| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Frame = +1
Query: 241 RPPGQQS----SPRGGARYPI 291
RPPG Q+ PRGGARY +
Sbjct: 32 RPPGDQAYRYRRPRGGARYQL 52
>SB_4861| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0063)
Length = 773
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 94 DLNEVVRLPSSLVLPTHPG*CG 29
DL+ +++ ++L LP HPG CG
Sbjct: 99 DLSVALQVCTNLGLPLHPGKCG 120
>SB_4823| Best HMM Match : HTH_1 (HMM E-Value=4.5e-18)
Length = 419
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 169 DPYLATWLQYRAHGKKHYDAQSHQRPPGQQSSPRGGARYPIRPIV 303
DP + ++ A KH+ AQ H+ QQS GG+ R ++
Sbjct: 282 DPTRELYSEFNAAFNKHWQAQGHEAITIQQS--HGGSGKQARAVI 324
>SB_891| Best HMM Match : DUF1098 (HMM E-Value=0.47)
Length = 715
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 205 HGKKHYDAQSHQRPPGQQSSPRGG 276
+G A SH PP QQS+P G
Sbjct: 171 YGLNQESAASHPCPPSQQSAPAPG 194
>SB_17030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 25.4 bits (53), Expect = 9.5
Identities = 24/80 (30%), Positives = 36/80 (45%)
Frame = +2
Query: 2 VLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRIS 181
V F +P+ T D A+W Y+V I L P IV V + ++++ RI
Sbjct: 169 VTTFRPAPHVTYCTEFWRD-ASWGVLYWVAIFILQYLVPLIIIVSQAAVIAVKLRKSRIP 227
Query: 182 LRGSSIVLMGKNTMMRKAIK 241
+ SS + K T +R IK
Sbjct: 228 MLSSSSETLYKKT-LRTRIK 246
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,148,496
Number of Sequences: 59808
Number of extensions: 214803
Number of successful extensions: 775
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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