Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310H09f
(309 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 115 6e-27
U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical pr... 29 0.50
AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical... 27 2.0
AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical... 27 2.0
X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic int... 27 2.7
U53154-2|AAC25856.1| 358|Caenorhabditis elegans Hypothetical pr... 27 2.7
U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate fi... 27 2.7
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z81556-6|CAB04523.2| 421|Caenorhabditis elegans Hypothetical pr... 26 6.2
AL110500-12|CAB60432.1| 362|Caenorhabditis elegans Hypothetical... 26 6.2
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 115 bits (277), Expect = 6e-27
Identities = 47/76 (61%), Positives = 65/76 (85%)
Frame = +2
Query: 44 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 223
M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM
Sbjct: 1 MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60
Query: 224 MRKAIKDHLDNNPALE 271
+RKA++ HL NP+LE
Sbjct: 61 IRKALRGHLGKNPSLE 76
>U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical
protein F10E7.5 protein.
Length = 220
Score = 29.5 bits (63), Expect = 0.50
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = +2
Query: 17 RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 196
R +L+++ ++ K T K+N ++ +D+Y FI N+ S + IR + +S
Sbjct: 6 RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64
Query: 197 IVLMGKNTMMRKAI 238
GKN ++ A+
Sbjct: 65 RFFFGKNNVISIAL 78
>AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical
protein Y105E8A.26b protein.
Length = 1133
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 234 PSKTTWTTIQPSRGGPVPNSPY 299
PS ++ +QPS PVPN Y
Sbjct: 854 PSNFDFSNVQPSNSNPVPNGRY 875
>AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical
protein Y105E8A.26a protein.
Length = 1172
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 234 PSKTTWTTIQPSRGGPVPNSPY 299
PS ++ +QPS PVPN Y
Sbjct: 893 PSNFDFSNVQPSNSNPVPNGRY 914
>X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 575
Score = 27.1 bits (57), Expect = 2.7
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +2
Query: 17 RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISL---R 187
RS Y +S R D +W Y +K+ ++ + + + N ++++++R +L R
Sbjct: 285 RSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTLGDMR 339
Query: 188 GSSIVLMGKNTMMRKAIKD 244
G L G+N ++ K I+D
Sbjct: 340 GKMADLEGRNLLLEKQIED 358
>U53154-2|AAC25856.1| 358|Caenorhabditis elegans Hypothetical
protein C33G8.12 protein.
Length = 358
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 8 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 112
K S ++ +SR+ +EDK + SN+++K QLL E
Sbjct: 159 KLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192
>U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate
filament, a protein 4 protein.
Length = 558
Score = 27.1 bits (57), Expect = 2.7
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +2
Query: 17 RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISL---R 187
RS Y +S R D +W Y +K+ ++ + + + N ++++++R +L R
Sbjct: 268 RSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTLGDMR 322
Query: 188 GSSIVLMGKNTMMRKAIKD 244
G L G+N ++ K I+D
Sbjct: 323 GKMADLEGRNLLLEKQIED 341
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 175 YLATWLQYRAHGKKHYDAQSHQRPPGQQSSPRGGARYPIRPI 300
YLA W Q R H ++ + Q Q PG PR YP P+
Sbjct: 781 YLA-WQQQRYHQQQQHQQQQQQGAPG---GPRPPYPYPGGPV 818
>Z81556-6|CAB04523.2| 421|Caenorhabditis elegans Hypothetical
protein F58G1.6 protein.
Length = 421
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +1
Query: 172 PYLATWLQYRAHGKKHYDAQSHQRPPGQQSSPR 270
P+ + +R HG YD S+QR + P+
Sbjct: 380 PFAPAYHMFRNHGPPKYDFNSNQRMMAESPPPQ 412
>AL110500-12|CAB60432.1| 362|Caenorhabditis elegans Hypothetical
protein Y87G2A.11 protein.
Length = 362
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 139 GTHDETFWVLVQELDDLNEVVRLPSSLVL 53
GTH T W + ++ L V RLP+ V+
Sbjct: 91 GTHSITIWNIEEDKRTLETVSRLPTEQVM 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,964,542
Number of Sequences: 27780
Number of extensions: 148380
Number of successful extensions: 507
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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