Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H09f
         (309 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...    80   3e-16
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...    80   3e-16
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)       76   4e-15
At5g13260.1 68418.m01523 expressed protein                             28   1.1  
At2g29640.1 68415.m03601 josephin family protein contains Pfam d...    27   1.9  
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si...    27   2.6  
At4g25070.1 68417.m03596 expressed protein ; expression supporte...    26   5.9  
At1g47810.1 68414.m05319 F-box family protein contains F-box dom...    26   5.9  
At5g64330.1 68418.m08080 non-phototropic hypocotyl 3 (NPH3) iden...    25   7.8  
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro...    25   7.8  
At1g07330.1 68414.m00781 hypothetical protein                          25   7.8  

>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 37/72 (51%), Positives = 51/72 (70%)
 Frame = +2

Query: 44  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 223
           M +  KA  K  Y  K+ QL+DEY +  +V ADNVGS Q+Q IR  LRG S+VLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 224 MRKAIKDHLDNN 259
           M+++++ H +N+
Sbjct: 61  MKRSVRIHSENS 72


>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score = 79.8 bits (188), Expect = 3e-16
 Identities = 37/71 (52%), Positives = 50/71 (70%)
 Frame = +2

Query: 44  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 223
           M +  KA  K  Y  K+ QL+DEY +  +V ADNVGS Q+Q IR  LRG S+VLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 224 MRKAIKDHLDN 256
           M+++++ H +N
Sbjct: 61  MKRSVRIHSEN 71


>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score = 76.2 bits (179), Expect = 4e-15
 Identities = 36/65 (55%), Positives = 47/65 (72%)
 Frame = +2

Query: 59  KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAI 238
           KA  K  Y  K+ QLL+EY +  +V ADNVGS Q+Q IR  LRG S+VLMGKNTMM++++
Sbjct: 7   KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66

Query: 239 KDHLD 253
           + H D
Sbjct: 67  RIHAD 71


>At5g13260.1 68418.m01523 expressed protein
          Length = 537

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 203 ARYWSHVARYGSAASVASPRYRH 135
           ARYW   +RYG  + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352


>At2g29640.1 68415.m03601 josephin family protein contains Pfam
           domain PF02099: Josephin; similar to Josephin-like
           protein (Swiss-Prot:O82391) [Arabidopsis thaliana]
          Length = 360

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 196 YRAHGKKHYDAQSHQRPPGQQSSPRG 273
           Y+A G K ++A +    PG+QSS +G
Sbjct: 229 YKATGTKRFNANTRPVTPGKQSSVKG 254


>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
           similar to SP|O94761 ATP-dependent DNA helicase Q4
           (RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 911

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 168 RSVSRYVAPVSCSWEKTL*CAKPSKTTWTTIQPSRGGPVPNSPY 299
           +S +++V PVS     +   +KP   T     PS+  PVP SPY
Sbjct: 29  QSPAKHVPPVSRKMTSSSSRSKPKAPTHPPPNPSQEAPVP-SPY 71


>At4g25070.1 68417.m03596 expressed protein ; expression supported
           by MPSS
          Length = 765

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 203 ARYWSHVARYGSAASVASPRYRH 135
           ARYW    ++G    +++ RY H
Sbjct: 543 ARYWELAVQHGICEDISTSRYEH 565


>At1g47810.1 68414.m05319 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 351

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 3   SLNFIEVPTPHYPG 44
           S   I+ PTPHYPG
Sbjct: 215 SWRMIQCPTPHYPG 228


>At5g64330.1 68418.m08080 non-phototropic hypocotyl 3 (NPH3)
           identical to non-phototropic hypocotyl 3 [Arabidopsis
           thaliana] gi|6224712|gb|AAF05914, PMID:10542152
          Length = 746

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 5   LKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYP 118
           + FH   Y  LSR G+ ++  ++S      I +LD+ P
Sbjct: 63  MNFHLHKYPLLSRSGKMNRLIYESRDPDPTILILDDLP 100


>At2g25050.1 68415.m02996 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 1111

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 150 PTLSAPTMKHFGYSSKSWMILTK 82
           P L+  T+ HF  S++SW++L++
Sbjct: 63  PLLTMETVHHFLKSAESWLLLSQ 85


>At1g07330.1 68414.m00781 hypothetical protein
          Length = 685

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 129 MKHFGYSSKSWMILTK*LDFQVALSSL 49
           ++HFGYSSK    L+   D QV +S +
Sbjct: 412 VEHFGYSSKKGHKLSVESDLQVEVSEI 438


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,723,534
Number of Sequences: 28952
Number of extensions: 146202
Number of successful extensions: 403
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)