Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H08f
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   164   7e-42
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   162   2e-41
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    29   0.50 
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   2.0  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    25   4.6  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   6.1  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   6.1  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    25   6.1  
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    25   8.1  
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    25   8.1  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   8.1  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    25   8.1  

>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  164 bits (398), Expect = 7e-42
 Identities = 79/127 (62%), Positives = 91/127 (71%)
 Frame = -2

Query: 486 GATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDP 307
           G TYGKP   GVN LK  R+ +  AEE           L+SYWV QD++YK+FEVILVDP
Sbjct: 78  GQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVDP 137

Query: 306 SHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNT 127
           SHKAIRRDP+INWIVN VHKHRE RGLTS G+ SRG+GKGHRY+ +    + A WLR NT
Sbjct: 138 SHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRYNNS---PQHATWLRHNT 194

Query: 126 LQLRRKR 106
           L LRR R
Sbjct: 195 LSLRRYR 201


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  162 bits (394), Expect = 2e-41
 Identities = 78/127 (61%), Positives = 91/127 (71%)
 Frame = -2

Query: 486 GATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDP 307
           G TYGKP   GVN LK  R+ +  AEE           L+SYWV QD++YK+FEVILVDP
Sbjct: 78  GQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVDP 137

Query: 306 SHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNT 127
           SHKAIRRDP+INWIVN VHKHRE RGLTS G+ SRG+GKGHR++ +    + A WLR NT
Sbjct: 138 SHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRFNNS---PQHATWLRHNT 194

Query: 126 LQLRRKR 106
           L LRR R
Sbjct: 195 LSLRRYR 201


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 28.7 bits (61), Expect = 0.50
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 356 LHKILHTSISRLSSWTRHTRPFVAILRSTGS*MLYISI 243
           L+KIL  S  ++ ++T H  P V ++ S     LYIS+
Sbjct: 47  LYKILQISAPKVGNFTIHDAPVVGLIDSILEYYLYISV 84


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 351  QDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHK 247
            +  S KY E     P H  +   PK  WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -3

Query: 101 HLSKTVSDFPFAYFCMQMESQWVNKILLL 15
           HL      FP+ YFC+ +    ++++ +L
Sbjct: 178 HLFYVFQSFPWTYFCLAVSGTCISELYVL 206


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -1

Query: 73  HLLIFVCRWKASGLIKYYC 17
           ++++F+C W   G ++ YC
Sbjct: 649 NIILFLCLWVQGGRVRAYC 667


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 394 SLRWSPCVELLLGCTRFF 341
           SL+  P V LL+G TRFF
Sbjct: 568 SLKVPPLVPLLIGTTRFF 585


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 228 LTSAGRSSRGLGKG-HRYSQTKGGSRRAAWLRRN 130
           ++SAG S  G GKG +    T   +RRAA   RN
Sbjct: 236 VSSAGYSGEGYGKGTYATDTTAEANRRAATGTRN 269


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 312 DPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKG-HRYSQTKGG 160
           DPS+  +   PK+N       K   +     +G+  RG G+G +R  + +GG
Sbjct: 329 DPSNGVVDGTPKLNSNTRGSSKRPSVNRSQGSGQRGRG-GRGFYRGGRGRGG 379


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 33  NPLAFHLHTKISKWKVTDSFR*MF 104
           N L FH+H K +K+ + ++ R ++
Sbjct: 79  NTLVFHVHLKANKFTIKEAVRKLY 102


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 406 ACWPSLRWSPCVELLLGCT 350
           +C PS R  P +ELLL C+
Sbjct: 595 SCGPSYRLLPKIELLLPCS 613


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 161 AHAGQLGSDATLFNYVAN 108
           A AG +  DAT F YV N
Sbjct: 240 ARAGMIAPDATTFEYVKN 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,948,706
Number of Sequences: 5004
Number of extensions: 34372
Number of successful extensions: 95
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)