Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H08f
         (490 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)             167   6e-42
SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.89 
SB_32922| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)                 29   2.1  
SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)                   28   3.6  
SB_3145| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.3  
SB_56703| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score =  167 bits (405), Expect = 6e-42
 Identities = 78/127 (61%), Positives = 92/127 (72%)
 Frame = -2

Query: 486 GATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDP 307
           GATYGKP + GVN+LK  R+L+S+AEE           L+SYWV QDS YKYFEVI+VDP
Sbjct: 78  GATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYWVGQDSIYKYFEVIMVDP 137

Query: 306 SHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNT 127
            HKAIRRD +INWI    HKHRE+RGLT+AG  +RG+ KGH Y++  G SRRA W R NT
Sbjct: 138 FHKAIRRDARINWICKPTHKHRELRGLTAAGTKNRGMRKGHNYNKVIGSSRRANWKRHNT 197

Query: 126 LQLRRKR 106
           L LRR R
Sbjct: 198 LSLRRYR 204


>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 26/73 (35%), Positives = 36/73 (49%)
 Frame = +1

Query: 82   LTVLDRCLSFAT*LKSVASEPSCPA*ASLCLRVSMSLAETSGAATSRSQTTHLAMLMYSI 261
            LT ++R L F T    + S   CPA   L L+V M L  +S + +    T+  A  + S+
Sbjct: 1488 LTPMERQLFFKTAHAHLNS--GCPA---LALQVLMELPASSLSESKTGSTSDEAPEVNSL 1542

Query: 262  HDPVDLRIATNGL 300
            HD  D  IAT  L
Sbjct: 1543 HDKTDDMIATGTL 1555


>SB_32922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 190 LAETSGAATSRSQTTHLAMLMYSIHDPVDLRIA 288
           + ++SG AT +S    L + + S  DPVD+RIA
Sbjct: 203 IRKSSGNATHQSHNCCLDLRLMSSEDPVDVRIA 235


>SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)
          Length = 300

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 255 VHKHREMRGLTSAGRSSRGLGKGHRYSQTK 166
           +H  + ++GLT A  S   LG GH YS+ K
Sbjct: 61  MHFDKMIKGLTGAMASKAQLGLGHSYSRAK 90


>SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 336  CMKNLVQPSKSSTHGDHRNDGQHAPQ-QWIEGCAWASTG*HHGSW 467
            C +    P ++S+H  +RN GQ A + Q     A A+ G  +G W
Sbjct: 883  CCRRWKSPGETSSHTVYRNKGQDAGEIQRTYTIAGANPGFQNGGW 927


>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 909

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 339 MKNLVQPSKSSTHGDHRNDGQHAPQQWIEGCAW 437
           ++NL  P +  T G     G + P+ W+ GCAW
Sbjct: 423 LQNLYIPPEGVT-GIPLGVGNYGPEAWLLGCAW 454


>SB_3145| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1125

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +3

Query: 165 PLFESIYVPCRDLGSCDQPKS---DHASRDAYVQH 260
           PLF  +YVPC      D P S    + +R A+++H
Sbjct: 698 PLFMDVYVPCTCTAHMDHPFSWMFMYRARTAHMEH 732


>SB_56703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 186 HRYSQTKGGSRRAAWLRRNTLQLRRKR*TSI*NCQ*LSICL 64
           HRY +T   S    +L  ++L++RRKR   +  CQ    C+
Sbjct: 51  HRYDRTASVSEMLNYLGWSSLEIRRKRARLLMACQQSRRCI 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,900,789
Number of Sequences: 59808
Number of extensions: 284618
Number of successful extensions: 706
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)