Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H08f
         (490 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094841-1|AAM11194.1|  204|Drosophila melanogaster RE01373p pro...   196   1e-50
AF030251-1|AAB84223.1|  204|Drosophila melanogaster ribosomal L1...   196   1e-50
AY119636-1|AAM50290.1|  620|Drosophila melanogaster RE43020p pro...    28   6.0  
U15803-1|AAC36490.1|  674|Drosophila melanogaster InaD protein.        28   7.9  
BT004473-1|AAO42637.1|  674|Drosophila melanogaster RH58949p pro...    28   7.9  
AF245280-1|AAF81203.1|  674|Drosophila melanogaster INAD protein.      28   7.9  
AE013599-3488|AAF46915.1|  674|Drosophila melanogaster CG3504-PA...    28   7.9  

>AY094841-1|AAM11194.1|  204|Drosophila melanogaster RE01373p
           protein.
          Length = 204

 Score =  196 bits (478), Expect = 1e-50
 Identities = 91/127 (71%), Positives = 101/127 (79%)
 Frame = -2

Query: 486 GATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDP 307
           G TYGKPKSHGVNQLKP R LQSIAEE           L+SYW+AQD+SYKYFEVIL+D 
Sbjct: 78  GCTYGKPKSHGVNQLKPYRGLQSIAEERVGRRLGGLRVLNSYWIAQDASYKYFEVILIDT 137

Query: 306 SHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNT 127
            H AIRRDPKINWI   VHKHRE+RGLTSAG+SSRG+GKG+RYSQT GGSRRAAW R+N 
Sbjct: 138 HHSAIRRDPKINWICKHVHKHRELRGLTSAGKSSRGIGKGYRYSQTIGGSRRAAWKRKNR 197

Query: 126 LQLRRKR 106
             + RKR
Sbjct: 198 EHMHRKR 204


>AF030251-1|AAB84223.1|  204|Drosophila melanogaster ribosomal L15
           (YL10) protein homologueprotein.
          Length = 204

 Score =  196 bits (478), Expect = 1e-50
 Identities = 91/127 (71%), Positives = 101/127 (79%)
 Frame = -2

Query: 486 GATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDP 307
           G TYGKPKSHGVNQLKP R LQSIAEE           L+SYW+AQD+SYKYFEVIL+D 
Sbjct: 78  GCTYGKPKSHGVNQLKPYRGLQSIAEERVGRRLGGLRVLNSYWIAQDASYKYFEVILIDT 137

Query: 306 SHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNT 127
            H AIRRDPKINWI   VHKHRE+RGLTSAG+SSRG+GKG+RYSQT GGSRRAAW R+N 
Sbjct: 138 HHSAIRRDPKINWICKHVHKHRELRGLTSAGKSSRGIGKGYRYSQTIGGSRRAAWKRKNR 197

Query: 126 LQLRRKR 106
             + RKR
Sbjct: 198 EHMHRKR 204


>AY119636-1|AAM50290.1|  620|Drosophila melanogaster RE43020p
           protein.
          Length = 620

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -1

Query: 373 VELLLGCTRFFIQVFRGYPRGPVTQGHSSRS*DQLDRECCT*ASRDAWSDFGWSQLPRSR 194
           V LL+   RF+I V RG P   V     +      + +  T ASR A       ++P+SR
Sbjct: 499 VGLLINIARFWIDVKRGSPPSKVVYVEHAHHQHHYEDQGTTGASRVAIGSAHCKRIPQSR 558

Query: 193 QGT 185
             T
Sbjct: 559 TQT 561


>U15803-1|AAC36490.1|  674|Drosophila melanogaster InaD protein.
          Length = 674

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 291 RRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGG-SRRAAWLRRNT 127
           + DP+ N  + A +K  + +   +     +G+G+G    Q   G +R+ +  +RNT
Sbjct: 114 KSDPRSNGYMQAKNKFNQEQTTNNNASGGQGMGQGQGQGQGMAGMNRQQSMQKRNT 169


>BT004473-1|AAO42637.1|  674|Drosophila melanogaster RH58949p
           protein.
          Length = 674

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 291 RRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGG-SRRAAWLRRNT 127
           + DP+ N  + A +K  + +   +     +G+G+G    Q   G +R+ +  +RNT
Sbjct: 114 KSDPRSNGYMQAKNKFNQEQTTNNNASGGQGMGQGQGQGQGMAGMNRQQSMQKRNT 169


>AF245280-1|AAF81203.1|  674|Drosophila melanogaster INAD protein.
          Length = 674

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 291 RRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGG-SRRAAWLRRNT 127
           + DP+ N  + A +K  + +   +     +G+G+G    Q   G +R+ +  +RNT
Sbjct: 114 KSDPRSNGYMQAKNKFNQEQTTNNNASGGQGMGQGQGQGQGMAGMNRQQSMQKRNT 169


>AE013599-3488|AAF46915.1|  674|Drosophila melanogaster CG3504-PA
           protein.
          Length = 674

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 291 RRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGG-SRRAAWLRRNT 127
           + DP+ N  + A +K  + +   +     +G+G+G    Q   G +R+ +  +RNT
Sbjct: 114 KSDPRSNGYMQAKNKFNQEQTTNNNASGGQGMGQGQGQGQGMAGMNRQQSMQKRNT 169


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,306,929
Number of Sequences: 53049
Number of extensions: 397422
Number of successful extensions: 1087
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1726192251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)