Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H08f
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   164   3e-41
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    30   0.78 
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    30   0.78 
AL117203-21|CAN86632.1|  171|Caenorhabditis elegans Hypothetical...    27   5.5  
AL117203-20|CAB55118.1|  244|Caenorhabditis elegans Hypothetical...    27   5.5  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  164 bits (399), Expect = 3e-41
 Identities = 74/127 (58%), Positives = 92/127 (72%)
 Frame = -2

Query: 486 GATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDP 307
           G TYGKPK+HGVN+LK  ++ Q++AE            L+SYWVA+DS+YK++EV+L+DP
Sbjct: 78  GQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYWVAEDSTYKFYEVVLIDP 137

Query: 306 SHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNT 127
            HKAIRR+P   WI   VHKHRE RGLTSAGR SRGLGKG R+S T+GGS+   W R+NT
Sbjct: 138 FHKAIRRNPDTQWITKPVHKHREQRGLTSAGRKSRGLGKGWRFSATRGGSQAKNWKRKNT 197

Query: 126 LQLRRKR 106
               RKR
Sbjct: 198 KVFHRKR 204


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
           protein 1 protein.
          Length = 4568

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 348 DSSYKYFEVILVDPSHKAIRRDP-KINWIVNAVHKHREMR 232
           D  Y  F  +L D + K  R DP K++W V AVHK  E R
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
           protein.
          Length = 4568

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 348 DSSYKYFEVILVDPSHKAIRRDP-KINWIVNAVHKHREMR 232
           D  Y  F  +L D + K  R DP K++W V AVHK  E R
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458


>AL117203-21|CAN86632.1|  171|Caenorhabditis elegans Hypothetical
           protein Y48C3A.18b protein.
          Length = 171

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/54 (22%), Positives = 24/54 (44%)
 Frame = +1

Query: 142 PSCPA*ASLCLRVSMSLAETSGAATSRSQTTHLAMLMYSIHDPVDLRIATNGLV 303
           P CP  +++C ++   LA+TS   +  S           +H  +DL +    ++
Sbjct: 48  PDCPIVSTICKKLGQPLAQTSANVSGSSLNPTSIDHFRDLHPNIDLILDAGSII 101


>AL117203-20|CAB55118.1|  244|Caenorhabditis elegans Hypothetical
           protein Y48C3A.18a protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/54 (22%), Positives = 24/54 (44%)
 Frame = +1

Query: 142 PSCPA*ASLCLRVSMSLAETSGAATSRSQTTHLAMLMYSIHDPVDLRIATNGLV 303
           P CP  +++C ++   LA+TS   +  S           +H  +DL +    ++
Sbjct: 121 PDCPIVSTICKKLGQPLAQTSANVSGSSLNPTSIDHFRDLHPNIDLILDAGSII 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,835,682
Number of Sequences: 27780
Number of extensions: 199855
Number of successful extensions: 505
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)