Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H08f
         (490 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)           149   1e-36
At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)           148   2e-36
At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloropl...    28   2.9  
At4g18440.1 68417.m02736 adenylosuccinate lyase, putative / aden...    27   5.1  
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s...    27   9.0  
At4g24680.1 68417.m03533 expressed protein                             27   9.0  
At1g65570.1 68414.m07438 polygalacturonase, putative / pectinase...    27   9.0  
At1g01070.2 68414.m00008 nodulin MtN21 family protein similar to...    27   9.0  
At1g01070.1 68414.m00009 nodulin MtN21 family protein similar to...    27   9.0  

>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score =  149 bits (360), Expect = 1e-36
 Identities = 69/128 (53%), Positives = 90/128 (70%), Gaps = 1/128 (0%)
 Frame = -2

Query: 486 GATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDP 307
           G  YGKP + GV QLK  R+ +S+AEE           ++SYW+ +DS+YKY+E+ILVDP
Sbjct: 78  GIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDP 137

Query: 306 SHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRN 130
           +H A+R DP+INWI N VHKHRE+RGLTS G+ +RGL GKGH   + +  SRRA W + N
Sbjct: 138 AHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNR-PSRRATWKKNN 196

Query: 129 TLQLRRKR 106
           +L LRR R
Sbjct: 197 SLSLRRYR 204


>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score =  148 bits (358), Expect = 2e-36
 Identities = 68/128 (53%), Positives = 90/128 (70%), Gaps = 1/128 (0%)
 Frame = -2

Query: 486 GATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDP 307
           G  YGKP + GV QLK  R+ +S+AEE           ++SYW+ +DS+YKY+E+ILVDP
Sbjct: 78  GIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDP 137

Query: 306 SHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRN 130
           +H A+R DP+INWI N VHKHRE+RGLTS G+ +RGL GKGH   + +  SRRA W + N
Sbjct: 138 AHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNR-PSRRATWKKNN 196

Query: 129 TLQLRRKR 106
           ++ LRR R
Sbjct: 197 SISLRRYR 204


>At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloroplast
           (FAD7) (FADD) identical to omega-3 fatty acid
           desaturase, chloroplast precursor SP:P46310 [Arabidopsis
           thaliana (Mouse-ear cress)]; identical to Pfam profile
           PF00487: Fatty acid desaturase; identical to cDNA
           plastid fatty acid desaturase GI:809491
          Length = 446

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 363 YWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIV 262
           YW+AQ + +    V+  D  H +   DPK+N +V
Sbjct: 147 YWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVV 180


>At4g18440.1 68417.m02736 adenylosuccinate lyase, putative /
           adenylosuccinase, putative similar to SP|P25739
           Adenylosuccinate lyase (EC 4.3.2.2) (Adenylosuccinase)
           {Escherichia coli}; contains Pfam profile PF00206: Lyase
          Length = 536

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = -3

Query: 221 RLVAAPEVSARDIDTLKQREAHAGQLGSDATLFN-YVANDKHLSKTVSDFPFAYFCMQME 45
           +LV + +V+A  +D +  R+     L + + L   Y +  K L+ ++S+F   YF + +E
Sbjct: 56  KLVTSTKVTA--MDGVSSRDLEMSNLTALSPLDGRYWSKVKDLASSLSEFGLIYFRVFVE 113

Query: 44  SQWVNKI 24
            +W+ K+
Sbjct: 114 IKWLLKL 120


>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
           similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
           [Drosophila melanogaster]
          Length = 926

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 222 SAGRSSRGLGKGHRYSQTKGGSR 154
           S  R SRG G+G R  Q+ GG R
Sbjct: 861 SGRRGSRGRGRGGRGGQSSGGRR 883


>At4g24680.1 68417.m03533 expressed protein
          Length = 1480

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 316  RGPVTQGHSSRS*DQLDRECCT*ASRDAWSDFGWSQLPRS 197
            RG V   HSS+  +Q+  +  T  ++D W+D GW   P +
Sbjct: 1182 RGTVNY-HSSKQTEQIAAKDQTTCNKDGWND-GWYMTPET 1219


>At1g65570.1 68414.m07438 polygalacturonase, putative / pectinase,
           putative similar to polygalacturonase 5 [Lycopersicon
           esculentum] GI:2459817; contains Pfam profile PF00295:
           Glycosyl hydrolases family 28 (polygalacturonases)
          Length = 397

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 326 RLSSWTRHTRPFVAILRSTGS*MLYIS 246
           R+ SW RH+  FV  +R  G+ M+ +S
Sbjct: 280 RIKSWPRHSNGFVERVRFLGAIMVNVS 306


>At1g01070.2 68414.m00008 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 318

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +3

Query: 351 VQPSKSSTHG--DHRNDGQHAPQQWIEGCAWASTG 449
           +  S S +HG   H N+ Q     W+ GC + + G
Sbjct: 118 ISNSHSHSHGGASHNNNDQDKANNWLLGCLYLTIG 152


>At1g01070.1 68414.m00009 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +3

Query: 351 VQPSKSSTHG--DHRNDGQHAPQQWIEGCAWASTG 449
           +  S S +HG   H N+ Q     W+ GC + + G
Sbjct: 165 ISNSHSHSHGGASHNNNDQDKANNWLLGCLYLTIG 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,388,431
Number of Sequences: 28952
Number of extensions: 188805
Number of successful extensions: 492
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)