Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H07f
         (441 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC022391-1|AAH22391.1|  161|Homo sapiens mitochondrial ribosomal...    67   3e-11
BC000217-1|AAH00217.1|  161|Homo sapiens mitochondrial ribosomal...    67   3e-11
AK126402-1|BAC86542.1|  191|Homo sapiens protein ( Homo sapiens ...    67   3e-11
AC092587-4|AAX88929.1|  161|Homo sapiens unknown protein.              67   3e-11
AB051342-1|BAB54932.1|   68|Homo sapiens mitochondrial ribosomal...    40   0.004
BC030275-1|AAH30275.1|  965|Homo sapiens vacuolar protein sortin...    29   7.1  
AY444798-1|AAS20945.1|  977|Homo sapiens vacuolar sorting protei...    29   7.1  
AF102177-1|AAF37319.1|  966|Homo sapiens tumor antigen SLP-8p pr...    29   9.4  

>BC022391-1|AAH22391.1|  161|Homo sapiens mitochondrial ribosomal
           protein L30 protein.
          Length = 161

 Score = 66.9 bits (156), Expect = 3e-11
 Identities = 33/70 (47%), Positives = 44/70 (62%)
 Frame = +3

Query: 228 DPEITPSKLFRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLI 407
           DP+  P KL  V RIKS++  PYW+K I+  L + +     V KNIP +NAKL  +KHLI
Sbjct: 59  DPQ-NPHKLHIVTRIKSTRRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLI 117

Query: 408 KITPIXFPYG 437
           +I P+  P G
Sbjct: 118 RIKPLKLPQG 127


>BC000217-1|AAH00217.1|  161|Homo sapiens mitochondrial ribosomal
           protein L30 protein.
          Length = 161

 Score = 66.9 bits (156), Expect = 3e-11
 Identities = 33/70 (47%), Positives = 44/70 (62%)
 Frame = +3

Query: 228 DPEITPSKLFRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLI 407
           DP+  P KL  V RIKS++  PYW+K I+  L + +     V KNIP +NAKL  +KHLI
Sbjct: 59  DPQ-NPHKLHIVTRIKSTRRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLI 117

Query: 408 KITPIXFPYG 437
           +I P+  P G
Sbjct: 118 RIKPLKLPQG 127


>AK126402-1|BAC86542.1|  191|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44438 fis, clone UTERU2019940, moderately
           similar to Homo sapiens mitochondrial ribosomal protein
           L30 (MRPL30). ).
          Length = 191

 Score = 66.9 bits (156), Expect = 3e-11
 Identities = 33/70 (47%), Positives = 44/70 (62%)
 Frame = +3

Query: 228 DPEITPSKLFRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLI 407
           DP+  P KL  V RIKS++  PYW+K I+  L + +     V KNIP +NAKL  +KHLI
Sbjct: 89  DPQ-NPHKLHIVTRIKSTRRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLI 147

Query: 408 KITPIXFPYG 437
           +I P+  P G
Sbjct: 148 RIKPLKLPQG 157


>AC092587-4|AAX88929.1|  161|Homo sapiens unknown protein.
          Length = 161

 Score = 66.9 bits (156), Expect = 3e-11
 Identities = 33/70 (47%), Positives = 44/70 (62%)
 Frame = +3

Query: 228 DPEITPSKLFRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLI 407
           DP+  P KL  V RIKS++  PYW+K I+  L + +     V KNIP +NAKL  +KHLI
Sbjct: 59  DPQ-NPHKLHIVTRIKSTRRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLI 117

Query: 408 KITPIXFPYG 437
           +I P+  P G
Sbjct: 118 RIKPLKLPQG 127


>AB051342-1|BAB54932.1|   68|Homo sapiens mitochondrial ribosomal
           protein L30 protein.
          Length = 68

 Score = 39.9 bits (89), Expect = 0.004
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = +3

Query: 351 VVKNIPEINAKLWKIKHLIKITPIXFPYG 437
           V KNIP +NAKL  +KHLI+I P+  P G
Sbjct: 6   VHKNIPSVNAKLKVVKHLIRIKPLKLPQG 34


>BC030275-1|AAH30275.1|  965|Homo sapiens vacuolar protein sorting
           54 homolog (S. cerevisiae) protein.
          Length = 965

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 219 DYKDPEITPSKLFRVERIKSSKHFPYWQKRILDELKIHEETR 344
           D+ D E+ PS  F + +I S +HF  +Q+ I    KIHE  +
Sbjct: 85  DFVDTEVIPS--FYLPQI-SKEHFTVYQQEISQREKIHERCK 123


>AY444798-1|AAS20945.1|  977|Homo sapiens vacuolar sorting protein
           54 long isoform protein.
          Length = 977

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 219 DYKDPEITPSKLFRVERIKSSKHFPYWQKRILDELKIHEETR 344
           D+ D E+ PS  F + +I S +HF  +Q+ I    KIHE  +
Sbjct: 97  DFVDTEVIPS--FYLPQI-SKEHFTVYQQEISQREKIHERCK 135


>AF102177-1|AAF37319.1|  966|Homo sapiens tumor antigen SLP-8p
           protein.
          Length = 966

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 219 DYKDPEITPSKLFRVERIKSSKHFPYWQKRILDELKIHEETR 344
           D+ D E+ PS  F + +I S +HF  +Q+ I    K+HE  +
Sbjct: 97  DFVDTEVIPS--FYLPQI-SKEHFTVYQQEISQREKVHERCK 135


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,869,306
Number of Sequences: 237096
Number of extensions: 1245259
Number of successful extensions: 6899
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6888
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3602345922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)