Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H07f
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100305-1|AAC68918.1|  197|Caenorhabditis elegans Hypothetical ...    43   9e-05
Z29443-8|CAE45742.1|  455|Caenorhabditis elegans Hypothetical pr...    30   0.86 
Z29443-7|CAA82571.2|  497|Caenorhabditis elegans Hypothetical pr...    30   0.86 
AF003739-7|AAB58068.1|  339|Caenorhabditis elegans Hypothetical ...    29   1.1  
AC006833-10|AAU87800.1|  262|Caenorhabditis elegans Enhancer of ...    29   2.0  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    28   2.6  
Z48621-9|CAE17931.1|  120|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AF100305-1|AAC68918.1|  197|Caenorhabditis elegans Hypothetical
           protein W04B5.4 protein.
          Length = 197

 Score = 43.2 bits (97), Expect = 9e-05
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = +3

Query: 246 SKLFRVERIKSSKHFPYWQKRILDEL--KIHEETRVTVVKNIPEINAKLWKIKHLIKITP 419
           SKL+     + +   P W K+ ++ L     +  R+ V +N   IN +LWKIKHLI++ P
Sbjct: 57  SKLWMAWLYRDTSAEPKWTKKHVENLFGADFKVGRMEVFRNTELINTELWKIKHLIELRP 116

Query: 420 IXFPYG 437
           + F  G
Sbjct: 117 VEFKNG 122


>Z29443-8|CAE45742.1|  455|Caenorhabditis elegans Hypothetical
           protein T07C4.9b protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 0.86
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 156 GYKHPGGIRYPGGITYYPRFPDY 224
           GY   GG  YPGG   YP+ P Y
Sbjct: 62  GYPGQGGAPYPGGSGGYPQAPQY 84


>Z29443-7|CAA82571.2|  497|Caenorhabditis elegans Hypothetical
           protein T07C4.9a protein.
          Length = 497

 Score = 29.9 bits (64), Expect = 0.86
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 156 GYKHPGGIRYPGGITYYPRFPDY 224
           GY   GG  YPGG   YP+ P Y
Sbjct: 104 GYPGQGGAPYPGGSGGYPQAPQY 126


>AF003739-7|AAB58068.1|  339|Caenorhabditis elegans Hypothetical
           protein M01D7.1 protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 383 FSIDFWYIFNHSDSGLLMNFQFIQYPFLP-VWKMFA*FNSLY 261
           FS+DFW  +    S     F  I+Y  LP +WK    FN L+
Sbjct: 132 FSLDFWIEWFCKSSADKKIFPIIKYTKLPKLWKFLNIFNELF 173


>AC006833-10|AAU87800.1|  262|Caenorhabditis elegans Enhancer of
           hand mutation hnd-1protein 3, isoform a protein.
          Length = 262

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 244 HQSYSE*SELNQANIFHTGKKGYWMN*KFMRRP 342
           HQ +S  + LN+  + H+GKK +    +F RRP
Sbjct: 8   HQKFSNKTNLNRHKVMHSGKKKF--ECQFCRRP 38


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +3

Query: 156 GYKHPGGIRYPGGITYYPRFPDYKDPEITPSKLFRVERIKSSKHFPY--WQKRILDELKI 329
           GY  PG +R P G    P  P    P   P   F     +  +H  Y  WQ++   + + 
Sbjct: 735 GYGPPGAMRPPAGFAPPPGAPYGYPPGAPPPAGFHPSHPQHPQHAQYLAWQQQRYHQQQQ 794

Query: 330 HEE 338
           H++
Sbjct: 795 HQQ 797


>Z48621-9|CAE17931.1|  120|Caenorhabditis elegans Hypothetical
           protein R07B1.11 protein.
          Length = 120

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 213 FPDYKDPEITPSKLFRVERIKS-SKHFPYWQKRILDELKIHEETRVTV 353
           F DYK P      +  +   K  S+H P  Q RIL+    H++ + T+
Sbjct: 72  FVDYKHPPTYNEVIRHIANTKPPSRHLPPNQPRILERGVPHQKQQTTI 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,596,406
Number of Sequences: 27780
Number of extensions: 201284
Number of successful extensions: 540
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)