Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H07f
         (441 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to simi...    27   4.2  
At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to simi...    27   4.2  
At2g17110.1 68415.m01974 expressed protein                             27   5.6  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    27   5.6  
At2g34230.1 68415.m04188 hypothetical protein contains Pfam prof...    27   7.4  
At1g21630.1 68414.m02708 calcium-binding EF hand family protein ...    27   7.4  

>At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to similar
           to SP|O04153 Calreticulin 3 precursor {Arabidopsis
           thaliana}
          Length = 370

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 10/48 (20%), Positives = 27/48 (56%)
 Frame = +3

Query: 255 FRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIK 398
           ++ +RIK+  +   W+   +D  +  ++  + V+K+I     ++W++K
Sbjct: 231 WKAKRIKNPNYKGKWKNPWIDNPEFEDDPDLYVLKSIKYAGIEVWQVK 278


>At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to similar
           to SP|O04153 Calreticulin 3 precursor {Arabidopsis
           thaliana}
          Length = 424

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 10/48 (20%), Positives = 27/48 (56%)
 Frame = +3

Query: 255 FRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIK 398
           ++ +RIK+  +   W+   +D  +  ++  + V+K+I     ++W++K
Sbjct: 285 WKAKRIKNPNYKGKWKNPWIDNPEFEDDPDLYVLKSIKYAGIEVWQVK 332


>At2g17110.1 68415.m01974 expressed protein
          Length = 733

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 216 PDYKDPEITPSKLFRVERIKSSKH-FPYWQKRILDELKIHEETRVTVVKNIPEI 374
           P Y D  I      +   + S+ H    W+K++ DE+K  E+ RV   K + ++
Sbjct: 385 PTYAD--IEAELALKSRNLSSTLHKLHLWEKKLYDEVKAEEKMRVNHEKKLRKL 436


>At1g03080.1 68414.m00282 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1744

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +3

Query: 264 ERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHL 404
           ER     H    +KRI D  K H E +V V++   E  + L KI+ L
Sbjct: 777 ERESLLSHIDTMRKRIEDLEKEHAELKVKVLELATERESSLQKIEEL 823


>At2g34230.1 68415.m04188 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 716

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 219 DYKDPEITPSKLFRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEI 374
           D+K  +I  +     +RIKS K F Y      D     +E R T++K   E+
Sbjct: 298 DWKPVDIAQAANLINDRIKSQKEFVYVNGWCSDWPVAGDEKRETILKQFSEV 349


>At1g21630.1 68414.m02708 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain; ESTs gb|T44428 and gb|AA395440 come from this
           gene
          Length = 1218

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +3

Query: 165 HPGGIRYPGGITYYPRFPDYKDPEITPSKLFRVERIKSSKHFPYWQKRILDELKIHEE 338
           HPGG+R P G    P+    +   ++PS    V+  +  +  P  +K ++D+L   E+
Sbjct: 539 HPGGLRPPAG----PKGKPPRPVPLSPSD-GMVQPTQPKRKMPVLEKPLVDQLSKEEQ 591


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,978,699
Number of Sequences: 28952
Number of extensions: 182277
Number of successful extensions: 408
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)