Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310H06f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual 203 1e-53
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 29 0.32
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 27 1.3
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 27 1.3
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 27 1.7
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 27 2.2
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 26 3.0
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 3.0
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 5.2
>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 203 bits (495), Expect = 1e-53
Identities = 100/174 (57%), Positives = 126/174 (72%), Gaps = 1/174 (0%)
Frame = -3
Query: 519 PPDTPRSKQLLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELADALEQMWQKKRYNEI 340
P +TP SK+LLT+E SNILIY+TGHGGDGF+KFQD+EE++S++LADA+EQ+ Q KRYNEI
Sbjct: 121 PENTPASKRLLTNERSNILIYMTGHGGDGFIKFQDAEELSSEDLADAIEQIHQHKRYNEI 180
Query: 339 FFIIDTCQASSMYEKFYSPNILATASSLVGEDSLSHHVDSAIGVYIIDRYTYYVLEFLEN 160
F++DTCQA+S+Y K YSPN+LA SS VG S SHH D IGV +IDR+T+ LEFLEN
Sbjct: 181 LFMVDTCQANSLYTKIYSPNVLAIGSSEVGTSSYSHHADIDIGVAVIDRFTFSNLEFLEN 240
Query: 159 -VHPNSKRTMSEFLAVCPKSACLSTVGVRKDLFNRDPSKVPITDFFGSVRPVIL 1
V SK TM + + ST GV+ R P + ITDFFG+VR + L
Sbjct: 241 RVDSKSKLTMQDLINSYNPYEIHSTPGVQPINLRRSPDDILITDFFGNVRDIEL 294
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 29.5 bits (63), Expect = 0.32
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 138 TMSEFLAVCPKSACLSTVGVRKDLFN 61
++S FL +CP++ CL TV V N
Sbjct: 222 SLSSFLKICPRNDCLQTVDVAFQFLN 247
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 369 MWQKKRYNEIFFIIDTCQASSMYEKFYSPNILATASSLVGEDSLS 235
+WQ K IF + A ++ YS I+ + LVG DSL+
Sbjct: 1128 VWQSKTIEMIFRYVSD-PAEALESSLYSSLIIIGSDDLVGPDSLN 1171
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 27.5 bits (58), Expect = 1.3
Identities = 22/88 (25%), Positives = 42/88 (47%)
Frame = -3
Query: 498 KQLLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELADALEQMWQKKRYNEIFFIIDTC 319
K L + +GS+I ++ G+G D +++ E Q D + +R+N+ ++ +
Sbjct: 394 KNLQSLKGSSIELFAQGYGKDSSFVVKNAVEYAKQNSFDVILIDTAGRRHND-QRLMGSL 452
Query: 318 QASSMYEKFYSPNILATASSLVGEDSLS 235
+ + K I A +LVG DSL+
Sbjct: 453 EKFTKATKL--DKIFQVAEALVGTDSLA 478
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 75 KDLFNRDPSKVPITDFFGSVRPV 7
K + D K+PI ++FG V PV
Sbjct: 1089 KKFYAGDEKKIPIVEYFGGVPPV 1111
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -3
Query: 321 CQASSMYEKFYSPNI-LATASSLVGEDSLSHHVDSAIGVYIIDRYTYYVLEFLENV 157
C A + +FY+ + T S+ S V S + YI+ TYY+ + +N+
Sbjct: 325 CIAGFVVNEFYTTRTRIITPSAFKTLSLTSVMVTSFLHYYIVSTITYYIPVYFQNI 380
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1
Query: 361 LPHLFQSISKLLAGH 405
LPH+ +SISKLLA H
Sbjct: 740 LPHMKKSISKLLADH 754
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 320 HVSIMKKISLYLFFCHICSKASASSWLVTSSES 418
H + KK+SL C CSK S+S ++ S S
Sbjct: 1418 HNAYNKKLSLLFDICRGCSKLSSSDPVLCKSNS 1450
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 171 FLENVHPNSKRTMSEFLAVCPKSACLSTVG 82
F++N++PNS + L S C ST G
Sbjct: 99 FVDNLNPNSSHFSASLLPASLSSLCDSTCG 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,561
Number of Sequences: 5004
Number of extensions: 46394
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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