Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H06f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33376| Best HMM Match : Peptidase_C13 (HMM E-Value=0.00035)        193   8e-50
SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_35570| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.25 
SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_22793| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_57167| Best HMM Match : Ribosomal_MRP8 (HMM E-Value=3)              27   9.4  
SB_45036| Best HMM Match : Guanylate_kin (HMM E-Value=0)               27   9.4  

>SB_33376| Best HMM Match : Peptidase_C13 (HMM E-Value=0.00035)
          Length = 1008

 Score =  193 bits (470), Expect = 8e-50
 Identities = 91/153 (59%), Positives = 112/153 (73%)
 Frame = -3

Query: 465 LIYLTGHGGDGFLKFQDSEEVTSQELADALEQMWQKKRYNEIFFIIDTCQASSMYEKFYS 286
           +++  GHGGDGFLKFQD+EEVTS ELADA EQMWQK+RY+E+F ++DTCQA SM  + YS
Sbjct: 132 ILFSPGHGGDGFLKFQDAEEVTSVELADAFEQMWQKQRYHELFLMVDTCQAYSMASRLYS 191

Query: 285 PNILATASSLVGEDSLSHHVDSAIGVYIIDRYTYYVLEFLENVHPNSKRTMSEFLAVCPK 106
           PN+LA  SSLVGEDSLSHH D +IGV++IDRYTYYVL+FLE V P+S+ T+ +       
Sbjct: 192 PNLLAVGSSLVGEDSLSHHDDPSIGVHVIDRYTYYVLQFLEKVRPDSEATIGDLFRYTKP 251

Query: 105 SACLSTVGVRKDLFNRDPSKVPITDFFGSVRPV 7
           S  +ST   R DLF R+  KV I  F   V  V
Sbjct: 252 SLVISTPRARTDLFTRNVDKVRIDLFTRDVGEV 284


>SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1902

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
 Frame = -3

Query: 462 IYLTGHGGDGFLKFQDSEE-VTSQELADALEQMWQKKRYNEIFFIIDTCQASSMYEKFYS 286
           +Y  G+GG  F  F  S   + +QE  D +  +++ +R+N I    D    S  YE F  
Sbjct: 656 VYSGGYGGGIFPGFASSTSCIYNQEDCD-IHYIYENQRWNPIEGFSDRTPFSMDYELFVQ 714

Query: 285 PNILATA----SSLVGEDSLSHHVDSAI 214
             I+       S L G+DSL H  +S +
Sbjct: 715 HPIVEALHEDDSVLHGDDSLLHEDESVL 742


>SB_35570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 663

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -1

Query: 143 KGLCRNFWLYVRKVLAYRQWEYEKIYSIEILVKCLSP 33
           K +  +F +   ++L YRQW YEK+  I+  VK LSP
Sbjct: 279 KPILGDFEISYLELLRYRQWLYEKLSCIDRHVKRLSP 315


>SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +2

Query: 320 HVSIMKKISL-YLFFCHICSKASASSWLVTSSES*NLRKPSPPWP-VR*ISMLLPSSVSN 493
           ++ + K+I+   LF C+I   A + S  V   E    +K    W  VR  S+L+P+ +SN
Sbjct: 204 NIHLSKEIAAEILFVCNITVGAMSKSTSVQPYE----KKRKVIWDEVRNFSILVPNKISN 259

Query: 494 CLER 505
           CL R
Sbjct: 260 CLNR 263


>SB_22793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 399 WSLLLSPET*GSRHHHGLLGRLVCYYLHQSVIAWS 503
           +SL L PET  S    G++   VC++   +   WS
Sbjct: 220 YSLPLQPETHPSNPRQGIVDGTVCFHWRSNCCLWS 254


>SB_57167| Best HMM Match : Ribosomal_MRP8 (HMM E-Value=3)
          Length = 698

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
 Frame = -1

Query: 176 WSFWKMFTLTAKGLCRNFWL------YVRKVLAYRQWEYEKIYS 63
           W F  ++T T +GL    WL      + ++ L  R+W +  +Y+
Sbjct: 409 WLFNTLYTYTERGLVTRRWLFNTLYTFTKRSLVTRRWLFNTLYT 452


>SB_45036| Best HMM Match : Guanylate_kin (HMM E-Value=0)
          Length = 288

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -3

Query: 420 QDSEEVTSQELADALEQMWQKKRYNEIFFIIDTCQASSMYEKFYSPNILATAS 262
           QDSEEV    +++A+ +M     ++ +    D  QA    +  ++ N L  A+
Sbjct: 139 QDSEEVIDHRMSEAVSEMVHYPEFDYVIINDDFDQALVQLQAVFTANRLTLAN 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,986,237
Number of Sequences: 59808
Number of extensions: 321560
Number of successful extensions: 810
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)