Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-7|CAA92977.2|  319|Caenorhabditis elegans Hypothetical pr...   195   2e-50
Z77653-3|CAB01126.1|  462|Caenorhabditis elegans Hypothetical pr...    52   2e-07
Z75551-5|CAA99935.1|  462|Caenorhabditis elegans Hypothetical pr...    52   2e-07
AF067448-1|AAF21773.1|  187|Caenorhabditis elegans hemoglobinase...    52   2e-07
Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z68336-5|CAA92740.3|  442|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U80026-2|AAY86280.1|  122|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z80789-3|CAB02553.1|  364|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AY008129-1|AAG32082.1|  364|Caenorhabditis elegans heterotrimeri...    28   4.7  
Z29095-13|CAA82357.1|  810|Caenorhabditis elegans Hypothetical p...    27   6.2  
Z22181-15|CAA80191.1|  810|Caenorhabditis elegans Hypothetical p...    27   6.2  
AF326940-1|AAG49390.1|  810|Caenorhabditis elegans replication l...    27   6.2  
AC024755-3|AAL65801.1|  231|Caenorhabditis elegans Hypothetical ...    27   6.2  
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with...    27   8.1  
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with...    27   8.1  
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi...    27   8.1  

>Z68751-7|CAA92977.2|  319|Caenorhabditis elegans Hypothetical
           protein T05E11.6 protein.
          Length = 319

 Score =  195 bits (475), Expect = 2e-50
 Identities = 92/170 (54%), Positives = 124/170 (72%), Gaps = 2/170 (1%)
 Frame = -3

Query: 516 PDTPRSKQLLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELADALEQMWQKKRYNEIF 337
           P TPRSK+LLTD  SN+LIYLTGHGGD F+KFQDSEE+T+ +LA A++ M++  RY+E+ 
Sbjct: 133 PATPRSKRLLTDHQSNVLIYLTGHGGDSFMKFQDSEELTNVDLAYAIQTMFEDNRYHEML 192

Query: 336 FIIDTCQASSMYEKFYSPNILATASSLVGEDSLSHHVDSAIGVYIIDRYTYYVLEFL--E 163
            I D+C+++SMYE   SPN+L+ +SSL  E+S S+ VD+ IGVY+IDRYT+Y + FL  E
Sbjct: 193 VIADSCRSASMYEWIDSPNVLSLSSSLTHEESYSYDVDTDIGVYVIDRYTHYTVNFLTKE 252

Query: 162 NVHPNSKRTMSEFLAVCPKSACLSTVGVRKDLFNRDPSKVPITDFFGSVR 13
               NS   M +++  CP   CLS  GVRKD + +D  +V +TDFFGS R
Sbjct: 253 VKALNSSANMQDYIDSCPARKCLSNTGVRKDHYPKDVKRVRVTDFFGSSR 302


>Z77653-3|CAB01126.1|  462|Caenorhabditis elegans Hypothetical
           protein T28H10.3 protein.
          Length = 462

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 22/73 (30%), Positives = 42/73 (57%)
 Frame = -3

Query: 513 DTPRSKQLLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELADALEQMWQKKRYNEIFF 334
           D    + L T++   + +Y T HG  G + F D   +T ++L D L  M + K+Y+++ F
Sbjct: 139 DGGNGRVLETNDNDRVFVYFTDHGAVGMISFPDGI-LTVKQLNDVLVWMHKNKKYSQLTF 197

Query: 333 IIDTCQASSMYEK 295
            ++ C++ SM+E+
Sbjct: 198 YLEACESGSMFEE 210


>Z75551-5|CAA99935.1|  462|Caenorhabditis elegans Hypothetical
           protein T28H10.3 protein.
          Length = 462

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 22/73 (30%), Positives = 42/73 (57%)
 Frame = -3

Query: 513 DTPRSKQLLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELADALEQMWQKKRYNEIFF 334
           D    + L T++   + +Y T HG  G + F D   +T ++L D L  M + K+Y+++ F
Sbjct: 139 DGGNGRVLETNDNDRVFVYFTDHGAVGMISFPDGI-LTVKQLNDVLVWMHKNKKYSQLTF 197

Query: 333 IIDTCQASSMYEK 295
            ++ C++ SM+E+
Sbjct: 198 YLEACESGSMFEE 210


>AF067448-1|AAF21773.1|  187|Caenorhabditis elegans
           hemoglobinase-type cysteine proteinaseprotein.
          Length = 187

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 22/73 (30%), Positives = 42/73 (57%)
 Frame = -3

Query: 513 DTPRSKQLLTDEGSNILIYLTGHGGDGFLKFQDSEEVTSQELADALEQMWQKKRYNEIFF 334
           D    + L T++   + +Y T HG  G + F D   +T ++L D L  M + K+Y+++ F
Sbjct: 93  DGGNGRVLETNDNDRVFVYFTDHGAVGMISFPDGI-LTVKQLNDVLVWMHKNKKYSQLTF 151

Query: 333 IIDTCQASSMYEK 295
            ++ C++ SM+E+
Sbjct: 152 YLEACESGSMFEE 164


>Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical
           protein B0462.1 protein.
          Length = 548

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 21/95 (22%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
 Frame = -3

Query: 402 TSQELADALEQMWQKKRYNEIFFIIDTCQASSMYEKFYSPN--ILATASS----LVGEDS 241
           ++Q+ A+ L++  ++   N++F+I+      S + K +SP   +++  S+    L   D 
Sbjct: 354 SNQQKAEILKERMEEFLTNDVFYIV-VFDCKSFFTKLFSPYAYVISCDSNSGNVLKSIDR 412

Query: 240 LSHHV--DSAIGVYIIDRYTYYVLEFLENVHPNSK 142
              HV    ++G+   + YT  +++F+    P+S+
Sbjct: 413 GECHVWIYRSVGLNTYENYTTRMIDFMRTFEPSSQ 447


>Z68336-5|CAA92740.3|  442|Caenorhabditis elegans Hypothetical
           protein F22B3.8 protein.
          Length = 442

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -3

Query: 213 GVYIIDRYTYYVLEFLENVHPNSKRTMSEFLAVCPKSACLSTVGVRKDLFNRD 55
           GV+++ +    V EF EN    SK ++ E L  C  S+C       K L +RD
Sbjct: 230 GVFLLKKPIMLVSEFCENYLQKSKVSVDEKLRFCLGSSCGLEYIHFKGLIHRD 282


>U80026-2|AAY86280.1|  122|Caenorhabditis elegans Hypothetical
           protein EGAP9.4 protein.
          Length = 122

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -1

Query: 239 FLIMLIQLLVYTSLIDTHTMCWSFWKMFTLTAKGLCRNFWL 117
           F I  I L V  +L D H  CWS +  + +    L RNF L
Sbjct: 25  FEIDAITLKVNETLWDKHRRCWSLFVQYYVKKLVLNRNFLL 65


>AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical
           protein Y39G8C.1 protein.
          Length = 1195

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 174 EFLENVHPNSKRTMSEFLAVCPKSACLSTVGVRKDLFNRDPSKVPITDFF 25
           E  E  HP       + LAV P+++        ++L + DP+K PI DF+
Sbjct: 565 ELSEPFHP-----FEQLLAVLPEASADCLPRPLRELMSSDPAKSPICDFY 609


>Z80789-3|CAB02553.1|  364|Caenorhabditis elegans Hypothetical
           protein F48C11.1 protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = -3

Query: 177 LEFLENVHPNSKRTMSEFLAVCPKSACLSTVGVRKDLFNRDPSKVPITDFFGSVRPVIL 1
           LE+L  +H N    +++ +  C        + V++D+   +  K  + D  G V PV++
Sbjct: 75  LEYLSIIHSNCMEALTQLVDACTAFGINHDITVQEDVNRFEDFKRKLRDPEGLVIPVVI 133


>AY008129-1|AAG32082.1|  364|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = -3

Query: 177 LEFLENVHPNSKRTMSEFLAVCPKSACLSTVGVRKDLFNRDPSKVPITDFFGSVRPVIL 1
           LE+L  +H N    +++ +  C        + V++D+   +  K  + D  G V PV++
Sbjct: 75  LEYLSIIHSNCMEALTQLVDACTAFGINHDITVQEDVNRFEDFKRKLRDPEGLVIPVVI 133


>Z29095-13|CAA82357.1|  810|Caenorhabditis elegans Hypothetical
           protein ZK632.1a protein.
          Length = 810

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 174 EFLENVHPNSKRTMSEFLAVCPKSACLSTVGVRKDLFNRD 55
           E +E V P  K  +   L V P  A LST G+R +  N++
Sbjct: 230 EMVETVQPGDKCDIVGTLIVIPDIAQLSTPGLRAETSNQN 269


>Z22181-15|CAA80191.1|  810|Caenorhabditis elegans Hypothetical
           protein ZK632.1a protein.
          Length = 810

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 174 EFLENVHPNSKRTMSEFLAVCPKSACLSTVGVRKDLFNRD 55
           E +E V P  K  +   L V P  A LST G+R +  N++
Sbjct: 230 EMVETVQPGDKCDIVGTLIVIPDIAQLSTPGLRAETSNQN 269


>AF326940-1|AAG49390.1|  810|Caenorhabditis elegans replication
           licensing factor MCM2/3/5-type protein protein.
          Length = 810

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 174 EFLENVHPNSKRTMSEFLAVCPKSACLSTVGVRKDLFNRD 55
           E +E V P  K  +   L V P  A LST G+R +  N++
Sbjct: 230 EMVETVQPGDKCDIVGTLIVIPDIAQLSTPGLRAETSNQN 269


>AC024755-3|AAL65801.1|  231|Caenorhabditis elegans Hypothetical
           protein Y34B4A.6 protein.
          Length = 231

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 396 QELADALEQMWQKKRYNEIFFIIDTCQASSMYEKFYSP 283
           Q+L  A+EQ +     N+ + ++ TC A   Y++ Y P
Sbjct: 56  QDLRSAIEQSYAN---NQAYGLLTTCDAFKQYKQCYQP 90


>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform a
           protein.
          Length = 2322

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -3

Query: 114 CPKSACLSTVGVRKDLFNRDPSKVPITDFF 25
           C KS+ +  +G+R  +F    S++P+T+++
Sbjct: 460 CAKSSLIVMMGIRPSIFEFFSSELPLTEYW 489


>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform b
           protein.
          Length = 2019

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -3

Query: 114 CPKSACLSTVGVRKDLFNRDPSKVPITDFF 25
           C KS+ +  +G+R  +F    S++P+T+++
Sbjct: 460 CAKSSLIVMMGIRPSIFEFFSSELPLTEYW 489


>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
           nonsense-mediated mRNA decay proteinSMG-1 protein.
          Length = 2322

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -3

Query: 114 CPKSACLSTVGVRKDLFNRDPSKVPITDFF 25
           C KS+ +  +G+R  +F    S++P+T+++
Sbjct: 460 CAKSSLIVMMGIRPSIFEFFSSELPLTEYW 489


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,144,011
Number of Sequences: 27780
Number of extensions: 251216
Number of successful extensions: 692
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)