Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310H03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 27 2.2
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 2.2
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.9
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 26 3.9
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 25 6.8
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 25 6.8
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 25 6.8
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 25 9.0
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 25 9.0
SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomy... 25 9.0
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 26.6 bits (56), Expect = 2.2
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Frame = -3
Query: 390 SRFAASSFEK*IQLCRPETSPFFNSDTNICSNPELLIFPFPLEYKLNQSC---FTKSLCC 220
S A SS + +Q + PF +S +N SN +FPF + C F ++
Sbjct: 171 SSSATSSTKPSVQSVGQASYPFLSSVSNFPSNFNSELFPFYFHDVVPSICAFEFDNNIAL 230
Query: 219 LGSGVT*PFSFKKFIKCLITLVAMMASINAFSSF 118
VT P F + + C+ + ASI F
Sbjct: 231 HFWSVTVP-QFAQSMPCIANSLMAFASIKKLDVF 263
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 287 SSGFEHIFVSELKNGEVSGLHNW 355
S+GFE F++E N E G NW
Sbjct: 10 SNGFETNFLNETTNREEDGAFNW 32
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 103 NATGTKRGKCVYGRHHGHKCYEAFNEFFERKRLCHTGS 216
N + K + V+GR H EA +RK+L H+ S
Sbjct: 22 NFSSNKSQRLVFGRKHKTAKLEAPRALIKRKQLSHSTS 59
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = -3
Query: 228 LCCLGSGVT*PFSFKKFIKCLITLVAMMASINAFSSFRSCGVTCSFTNVLLS*LSKS 58
LCCLGS + S F+ +++ +++ S F+ + FT + S L K+
Sbjct: 219 LCCLGSAIFAKASNALFVVIILSTISIPISSIFVHPFKDPSLLVHFTGLKWSTLMKN 275
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 47 KIVPLLDNYERSTLVNEHVTPQERNEENAFMDAIMATSVMRHLMNFLKEKGYVTPD 214
K++ L D+ TLVN N + DAI A +++L E YV+P+
Sbjct: 670 KLIGLKDSVIE-TLVNVETVKVNYNHFTSISDAISAMQNLKYLSCTNCEMSYVSPN 724
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 93 FTNVLLS*LSKSGTIFSIVGIFHAADDIFSS 1
+ NVL++ + +SG I +G+ DI+ S
Sbjct: 308 YINVLVTDIKESGVIAKYMGVVDVTSDIYHS 338
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +2
Query: 143 AIMATSVMRHLMNFLKEKGYVTPDPRQQRDFVKQLWFSLYS 265
+I+ + +M + L +K DP+ +R F+ Q+W ++
Sbjct: 22 SIIVSVLMSFISQTLMDKDGNVTDPKLKRKFMLQVWIGSFT 62
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 333 SPFFNSDTNICSNPELLIFPFPLEYKLNQSCFTKS 229
S F SD N+ L +P ++ LN S TKS
Sbjct: 17 SSTFASDNNLRRKENFLKSRYPSKFDLNVSMLTKS 51
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 44 EKIVPLLDNYERSTLVNEHVTPQERNEENAFMDAIMATSVM-RHLMNFL 187
EK++ + ++ N H+T ER+ +D ++A ++M +L+ FL
Sbjct: 24 EKVISRSNTASPISIENTHLTKSERDSLLFRLDLVLAPTIMILYLVAFL 72
>SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 282 IFPFPLEYKLNQSCFTKSL 226
++ F LE+ +++ C TKSL
Sbjct: 222 VYQFSLEHSVDEDCVTKSL 240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,479
Number of Sequences: 5004
Number of extensions: 50267
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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