Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0672 + 27164628-27164792,27164903-27164965,27165298-271654...    97   1e-20
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689...    28   4.0  
01_05_0274 - 20293963-20294065,20294501-20294560,20295006-202950...    28   4.0  
01_06_0509 - 29921224-29924589                                         27   6.9  

>04_04_0672 +
           27164628-27164792,27164903-27164965,27165298-27165408,
           27165454-27165537,27166081-27166194,27166901-27167494,
           27167604-27167675,27167761-27167997
          Length = 479

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 59/160 (36%), Positives = 82/160 (51%), Gaps = 4/160 (2%)
 Frame = +2

Query: 35  PTIEKIVPLLDNYERSTLVNEHVTPQERNEENAFMDAIMATSVMRHLMNFLKEKGYVTPD 214
           PT  +   LLDNY       E VT Q+++EE AF++ I  T+ +++L  +L  KG  + D
Sbjct: 272 PTYSRFCALLDNYNPHQGYKEVVTQQDKHEEVAFIEEIARTAPIKYLHRYLVLKGVASQD 331

Query: 215 PRQQRDFVKQLWFSLYSRGKGKISSSGFEHIFVSELKNGEVSGLHNWIYFSKEEAANRLN 394
               +  +  LWF LY RG    SSS FEH+FV E+K     G  N  Y   EEA   ++
Sbjct: 332 YEDFKRMLTSLWFDLYGRGGSSSSSSAFEHVFVGEIKGRRGQG-ENEFYL--EEANGNVD 388

Query: 395 YLGYLKYRQFGE----RGAVIKFHFTQQGVDKPVNSMFIG 502
           Y GY+  R+ GE       ++   F   GV K V+S  IG
Sbjct: 389 YQGYIFPRRRGESPDSETQLLTIQFEWHGVLKSVSSTLIG 428


>09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,
            6899245-6899386,6899951-6900020,6900077-6900216,
            6900291-6900365,6901083-6904723
          Length = 1448

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +2

Query: 281  ISSSGFEHIFVSELKNGEVSGLHNWIYFSKE---EAANRLNYLGYLKYR 418
            I S GF  ++ ++LK+G V  +   I+F+ +   E    +  +G +K+R
Sbjct: 918  IGSGGFGEVYKAKLKDGSVVAIKKLIHFTGQGDREFTAEMETIGKIKHR 966


>01_05_0274 -
           20293963-20294065,20294501-20294560,20295006-20295052,
           20296065-20296155,20296276-20296427,20296891-20297049,
           20297132-20297381,20298255-20298317,20298394-20298566
          Length = 365

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 498 MNIELTGLSTPCWVKWNLITAP 433
           + I LT LST CW  W ++  P
Sbjct: 143 LGIFLTTLSTTCWALWTVLQGP 164


>01_06_0509 - 29921224-29924589
          Length = 1121

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +2

Query: 278 KISSSGFEHIFVSELKNGEVSGLHNWIYFSKE---EAANRLNYLGYLKYR 418
           +I S GF  ++ ++LK+G+V  +   I+ S +   E    +  +G +K+R
Sbjct: 812 QIGSGGFGDVYKAQLKDGKVVAIKKLIHVSGQGDREFTAEMETIGKIKHR 861


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,312,000
Number of Sequences: 37544
Number of extensions: 289394
Number of successful extensions: 679
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)