Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H03f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31891| Best HMM Match : No HMM Matches (HMM E-Value=.)              93   1e-19
SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022)                    60   8e-10
SB_19356| Best HMM Match : Cucumo_2B (HMM E-Value=7.3)                 46   1e-05
SB_31211| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   1e-04
SB_24369| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)                    29   3.1  
SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07)                28   4.1  
SB_41487| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_21713| Best HMM Match : ShTK (HMM E-Value=3.9e-05)                  27   7.1  
SB_13068| Best HMM Match : YjeF_N (HMM E-Value=1.2e-07)                27   7.1  
SB_9522| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_31891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 55/139 (39%), Positives = 72/139 (51%), Gaps = 3/139 (2%)
 Frame = +2

Query: 11  ISSAAWNIPTIEKIVPLLDNYERSTLVNEHVTPQERNEENAFMDAIMATSVMRHLMNFLK 190
           ++  A   PT +  V LLDNY   T   E V  +E NE   F+D I  T  M     FL 
Sbjct: 49  VNPEALRKPTYDAFVKLLDNYASETGKPEVVNQEEINENRVFIDRIYDTGPMEIAHKFLA 108

Query: 191 EKGYVTPDPRQQRDFVKQLWFSLYSRGKG-KI-SSSGFEHIFVSELK-NGEVSGLHNWIY 361
            KG V  D    +  + Q+WF LY R +G ++  SSGFEH+FV E +   EV G HNWI 
Sbjct: 109 GKGLVPSDRPGFKKKLYQMWFELYQRTRGCRVKDSSGFEHVFVGETRGKEEVIGFHNWIQ 168

Query: 362 FSKEEAANRLNYLGYLKYR 418
           F  +E A  ++Y G+   R
Sbjct: 169 FYLQEKAGVVDYKGFFPNR 187


>SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022)
          Length = 616

 Score = 60.5 bits (140), Expect = 8e-10
 Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
 Frame = +2

Query: 221 QQRDFVKQLWFSLYSRGKGKISSSGFEHIFVSEL----KNGE--VSGLHNWIYFSKEEAA 382
           Q  D + ++WF  Y+RG  +  SSGFEH+FV E     K+G+  V G H+W+ F  +E  
Sbjct: 2   QFEDQLYKIWFYFYNRGAYR-DSSGFEHVFVGEKYDDSKSGKKIVKGYHSWLQFYLQEKR 60

Query: 383 NRLNYLGYLKYRQFGERGAVIKFHFTQQGVDKPVNSMFIG 502
              +Y GY        RG  +K  F     DK V+S F+G
Sbjct: 61  RDADYHGYYALSTSEPRG--LKLKFDVNNYDKVVSSFFLG 98


>SB_19356| Best HMM Match : Cucumo_2B (HMM E-Value=7.3)
          Length = 194

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 25/58 (43%), Positives = 34/58 (58%)
 Frame = +2

Query: 59  LLDNYERSTLVNEHVTPQERNEENAFMDAIMATSVMRHLMNFLKEKGYVTPDPRQQRD 232
           L DNY   T   EH + QER E+  F++A+MAT VM+   N+L  +  V P  R+ RD
Sbjct: 13  LFDNYFLYTGNKEHESKQEREEKKGFIEAVMATDVMKLTHNYLVHERLV-PKSREPRD 69


>SB_31211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 21/50 (42%), Positives = 29/50 (58%)
 Frame = +2

Query: 38  TIEKIVPLLDNYERSTLVNEHVTPQERNEENAFMDAIMATSVMRHLMNFL 187
           T   +  L DNY   T   EH + QER E+  F++A+MAT VM+   N+L
Sbjct: 63  TFSSMEALFDNYFLYTGNKEHESKQEREEKKGFIEAVMATDVMKLTHNYL 112


>SB_24369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 140 DAIMATSVMRHLMNFLKEKGYVTPDPRQQRDFVKQLWFSLYSRGK 274
           +A+    V+  L+N +KEK YV  DP  Q   + +    L ++ K
Sbjct: 105 NALTEVCVLSDLLNVVKEKKYVVLDPVSQSQAISKPTLQLLAKKK 149


>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
          Length = 843

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 127 KCVYGRHHGHKCYEAFNEFFERKR 198
           K +YG H GH C+E  +E  ER+R
Sbjct: 557 KKIYGAHKGHSCFEV-HEAEERER 579


>SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07)
          Length = 825

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 71  YERSTLVNEHVTPQERNEENAFMDAIMATSVMRHLMNFLKEKGYVTPDPR 220
           Y R    + ++   E +E N   D  +   ++RH    +KE+   TPDP+
Sbjct: 608 YYRQAGWSAYIGVVEGSEINQHSDERLLREMLRHRNKIIKERLETTPDPK 657


>SB_41487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 4   AKYIISGMEYSNNRKNCPTLGQLRKKHV 87
           +KY+IS  E+S+  KN   L Q R KHV
Sbjct: 94  SKYLISDKEFSHYGKNILHLKQGRGKHV 121


>SB_21713| Best HMM Match : ShTK (HMM E-Value=3.9e-05)
          Length = 378

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -3

Query: 324 FNSDTNICSNPELLIFPFPLEYKLNQSCFTKSLCCLGSGVT*P 196
           +  ++N+CSNP+L   PF L +   +SC   + C  GS +T P
Sbjct: 56  WKKNSNMCSNPKLA--PF-LRFGCAKSC---AFCSKGSAITTP 92


>SB_13068| Best HMM Match : YjeF_N (HMM E-Value=1.2e-07)
          Length = 257

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 22/80 (27%), Positives = 33/80 (41%)
 Frame = +2

Query: 53  VPLLDNYERSTLVNEHVTPQERNEENAFMDAIMATSVMRHLMNFLKEKGYVTPDPRQQRD 232
           V LL   +R T  N H TP         +  +      RHL N  +        PR+ +D
Sbjct: 91  VQLLGGPQRFTRSNAHQTPSVVVMAGPHIQGLQGICTARHLAN--RNVQVTLFIPRKTQD 148

Query: 233 FVKQLWFSLYSRGKGKISSS 292
            + QL  +LY    G +++S
Sbjct: 149 LIPQL--ALYMHTGGALAAS 166


>SB_9522| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 101 HVHLLTCFFRNCPRVGQFFLLL 36
           H H LT   R CP +G ++L++
Sbjct: 40  HSHSLTIHLRQCPPIGSWWLII 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,801,324
Number of Sequences: 59808
Number of extensions: 349592
Number of successful extensions: 854
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)