Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75544-4|CAA99880.1|  307|Caenorhabditis elegans Hypothetical pr...   110   5e-25
U39995-3|AAF99995.2|  572|Caenorhabditis elegans Hypothetical pr...    70   1e-12
Z81545-6|CAB04441.1|  287|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U60449-1|AAB03510.1|  974|Caenorhabditis elegans GLH-2 protein.        27   8.1  
U60194-1|AAB03337.1|  974|Caenorhabditis elegans RNA helicase GL...    27   8.1  
U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical p...    27   8.1  
AC006625-11|AAK68269.1|  974|Caenorhabditis elegans Germ-line he...    27   8.1  

>Z75544-4|CAA99880.1|  307|Caenorhabditis elegans Hypothetical
           protein K02A11.3 protein.
          Length = 307

 Score =  110 bits (265), Expect = 5e-25
 Identities = 60/169 (35%), Positives = 95/169 (56%), Gaps = 5/169 (2%)
 Frame = +2

Query: 11  ISSAAWNIPTIEKIVPLLDNYERSTLVNEHVTPQ--ERNEENAFMDAIMATSVMRHLMNF 184
           + ++ +  P+ E  + L+DN+ R T V E    Q  E+NE   F+D ++ +  M+ L N+
Sbjct: 75  VDTSLFRKPSYELYINLMDNFNRQTGVIEPRVSQAEEKNEVGKFLDYVLESRPMQELYNW 134

Query: 185 LKEKGY-VTPDPRQQRDFVKQLWFSLYSRGKGKISSSGFEHIFVSELKNGEVSGLHNWI- 358
            K KG+ +   P+  R ++ QLWFS YSR  G+  +SGFEH+F+ E KNGE+SG+HNW+ 
Sbjct: 135 FKAKGHPIATSPQVFRFWIGQLWFSHYSRALGRPDTSGFEHVFIGEAKNGEISGMHNWVR 194

Query: 359 -YFSKEEAANRLNYLGYLKYRQFGERGAVIKFHFTQQGVDKPVNSMFIG 502
            Y  +       +Y G+   ++F    A+    FT  G+ K   S+ IG
Sbjct: 195 FYVLENNRTENFDYKGF-TVKRFNIMAAL---KFTWDGLLKRAGSILIG 239


>U39995-3|AAF99995.2|  572|Caenorhabditis elegans Hypothetical
           protein M60.2 protein.
          Length = 572

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 31/86 (36%), Positives = 48/86 (55%)
 Frame = +2

Query: 245 LWFSLYSRGKGKISSSGFEHIFVSELKNGEVSGLHNWIYFSKEEAANRLNYLGYLKYRQF 424
           LWF  Y+R KG + SSG+EH+F  E+K+ EV G H+W+ +  E+ A+++ Y GY  +   
Sbjct: 436 LWFGTYTRCKGPLGSSGWEHVFSGEIKSNEVDGQHDWVRYYTEQKADKMVYDGYYTH--- 492

Query: 425 GERGAVIKFHFTQQGVDKPVNSMFIG 502
            +   +  F +   G  KP    F G
Sbjct: 493 -DENLIGTFQYKWNGALKPKGGFFTG 517



 Score = 63.7 bits (148), Expect = 8e-11
 Identities = 37/123 (30%), Positives = 60/123 (48%)
 Frame = +2

Query: 38  TIEKIVPLLDNYERSTLVNEHVTPQERNEENAFMDAIMATSVMRHLMNFLKEKGYVTPDP 217
           TI  ++P   NY+  T V    +    +    F+D  +A+  ++    FL+ +G  T DP
Sbjct: 86  TIANLMPFF-NYDSDTAVP--TSADYASAVKDFLDNFIASDAVKQAWTFLQAQGVSTSDP 142

Query: 218 RQQRDFVKQLWFSLYSRGKGKISSSGFEHIFVSELKNGEVSGLHNWIYFSKEEAANRLNY 397
              R  +  LWF  Y+R +  + S GF+ +FV E     V+   NW+ F  +E A + NY
Sbjct: 143 IDFRQQLYNLWFLPYARNQA-LGSCGFKSVFVGEATGTVVNRFANWVGFYIQENAGKFNY 201

Query: 398 LGY 406
            G+
Sbjct: 202 HGW 204


>Z81545-6|CAB04441.1|  287|Caenorhabditis elegans Hypothetical
           protein F49H6.7 protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 240 FTKSLCCLGSGVT*PFSFKKFIKCLITLVAMMASINAFSSFRSCGVTCSFTNV 82
           FT +    G   +  F F  +I  L+  + M+ASI +  +  S GV C F ++
Sbjct: 211 FTLANAPYGLAYSISFWFSNYITMLMAQITMLASILSTLNSASHGVVCYFMSI 263


>U60449-1|AAB03510.1|  974|Caenorhabditis elegans GLH-2 protein.
          Length = 974

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 83  TLVNEHVTPQERNEENAFMDAIMATSVMRHLMNFLKEKGYV 205
           T+VN    P++ N +     A    SV     N LKE GY+
Sbjct: 727 TIVNYESMPKKENRQTLMFSATFPDSVQEAARNHLKE-GYI 766


>U60194-1|AAB03337.1|  974|Caenorhabditis elegans RNA helicase GLH-2
           protein.
          Length = 974

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 83  TLVNEHVTPQERNEENAFMDAIMATSVMRHLMNFLKEKGYV 205
           T+VN    P++ N +     A    SV     N LKE GY+
Sbjct: 727 TIVNYESMPKKENRQTLMFSATFPDSVQEAARNHLKE-GYI 766


>U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical
           protein F20D6.12 protein.
          Length = 513

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 116 VPVALHVHLLTCFFRNCPRVGQFFLLLEY 30
           +PV +H  LL    +N  +   FFL+  Y
Sbjct: 340 IPVTIHYFLLIIVIKNAKKANGFFLIFYY 368


>AC006625-11|AAK68269.1|  974|Caenorhabditis elegans Germ-line
           helicase protein 2 protein.
          Length = 974

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 83  TLVNEHVTPQERNEENAFMDAIMATSVMRHLMNFLKEKGYV 205
           T+VN    P++ N +     A    SV     N LKE GY+
Sbjct: 727 TIVNYESMPKKENRQTLMFSATFPDSVQEAARNHLKE-GYI 766


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,776,127
Number of Sequences: 27780
Number of extensions: 273347
Number of successful extensions: 741
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)