Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   3.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   3.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.7  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   7.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.7  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 169 PHNTCGHDGVHKRIFLVSFLWRY 101
           P  T    G+H++  L+S  W Y
Sbjct: 52  PAQTTSKAGIHRKKVLLSVWWDY 74


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 169 PHNTCGHDGVHKRIFLVSFLWRY 101
           P  T    G+H++  L+S  W Y
Sbjct: 174 PAQTTSKAGIHRKKVLLSVWWDY 196


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 14/63 (22%), Positives = 24/63 (38%)
 Frame = +1

Query: 19  SGMEYSNNRKNCPTLGQLRKKHVSK*TCNATGTKRGKCVYGRHHGHKCYEAFNEFFERKR 198
           +G    ++   CP L +L K  +S  T   +     K    R+H +      N   ++K 
Sbjct: 301 TGGPRKSHESQCPMLQKLEKPVLSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSPHQKKL 360

Query: 199 LCH 207
             H
Sbjct: 361 RFH 363


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 516 TQVMYPMNIELTGLSTPCWVKWNLITA 436
           T V  P  I +T      W++WN + A
Sbjct: 305 TTVFIPGIILVTSSFITFWLEWNAVPA 331


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 516 TQVMYPMNIELTGLSTPCWVKWNLITA 436
           T V  P  I +T      W++WN + A
Sbjct: 274 TTVFIPGIILVTSSFITFWLEWNAVPA 300


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 516 TQVMYPMNIELTGLSTPCWVKWNLITA 436
           T V  P  I +T      W++WN + A
Sbjct: 325 TTVFIPGIILVTSSFITFWLEWNAVPA 351


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 516 TQVMYPMNIELTGLSTPCWVKWNLITA 436
           T V  P  I +T      W++WN + A
Sbjct: 274 TTVFIPGIILVTSSFITFWLEWNAVPA 300


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 499 NEHRVNRLVHSLLGEVEFNHCSTLPKL 419
           +  +VNRLV++     E N C    KL
Sbjct: 92  DSEQVNRLVNNCKDITESNSCKKSSKL 118


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 510 VMYPMNIELTGLSTPCWVKWNLITAPRSPNCLY 412
           V+Y  N+  +GLS   W+    +T P S + ++
Sbjct: 532 VVYACNVVGSGLSHGNWIYPASMTIPGSNSAVF 564


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,598
Number of Sequences: 438
Number of extensions: 3526
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)