Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H03f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20430.1 68418.m02429 mob1/phocein family protein contains Pf...    29   2.5  
At4g35270.1 68417.m05012 RWP-RK domain-containing protein simila...    28   3.3  
At4g29910.1 68417.m04256 origin recognition complex subunit 5-re...    23   5.0  
At4g14620.1 68417.m02250 expressed protein contains Pfam profile...    27   5.8  
At2g17150.1 68415.m01980 RWP-RK domain-containing protein simila...    27   5.8  
At5g57380.1 68418.m07169 fibronectin type III domain-containing ...    27   7.7  
At3g52330.1 68416.m05751 F-box family protein-related contains w...    27   7.7  
At1g12160.1 68414.m01408 flavin-containing monooxygenase family ...    27   7.7  

>At5g20430.1 68418.m02429 mob1/phocein family protein contains Pfam
           profile: PF03637 mob1/phocein family
          Length = 122

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 134 THFPRFVPVALHVHLLTCFFRNCPRVGQFFLL 39
           +HFP+ V +    HL TCF R    V +F L+
Sbjct: 73  SHFPKIVTLNEQAHLNTCFHRYLLFVSEFQLV 104


>At4g35270.1 68417.m05012 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 974

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +2

Query: 221 QQRDFVKQLWFSLYSRGKGKISSSGFEHIF---VSELKN-GEVSGLHNWI 358
           Q +DF+ Q+W  +   GK  +++S   H F    S LK   +VS  +N++
Sbjct: 169 QDKDFLIQIWLPIQQEGKNFLTTSEQPHFFNPKYSSLKRYRDVSVAYNFL 218


>At4g29910.1 68417.m04256 origin recognition complex subunit
           5-related (ORC5) contains weak similarity to Origin
           recognition complex subunit 5 (Swiss-Prot:Q9WUV0) [Mus
           musculus]
          Length = 534

 Score = 23.0 bits (47), Expect(2) = 5.0
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -3

Query: 357 IQLCRPETSPFFNSDTNICSNPELLIFPFPLEYKLNQSC 241
           +Q+ R    PF  S    C NP +L      +  L++ C
Sbjct: 94  LQVLRHLNRPFVYSSCRTCYNPRILFESILNQSLLHRKC 132



 Score = 23.0 bits (47), Expect(2) = 5.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 162 TLVAMMASINAFSSFRSCGVTCSFTNVLLS*LS 64
           +L+    S+N +SS + C     F N+L   LS
Sbjct: 126 SLLHRKCSLNGYSSAKRCDKPSDFVNLLREALS 158


>At4g14620.1 68417.m02250 expressed protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 341

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 185 LKEKGYVTPDPRQQRDFVKQLWFSLYSRGKGK 280
           LK+KG   P P ++ D+++  W S Y+R  G+
Sbjct: 240 LKKKGMHFP-PWRKADYMRAKWLSSYTRNSGE 270


>At2g17150.1 68415.m01980 RWP-RK domain-containing protein similar
           to nodule inception protein [Lotus japonicus]
           GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
          Length = 909

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 221 QQRDFVKQLWFSLYSRGKGKISSSGFEHIFVSE 319
           Q +DF+ Q+W  +   GK  +++    H+F  E
Sbjct: 140 QDKDFLVQIWVPIQQEGKSFLTTWAQPHLFNQE 172


>At5g57380.1 68418.m07169 fibronectin type III domain-containing
           protein / PHD finger protein-related contains Pfam
           profiles PF00041: Fibronectin type III domain, PF00628:
           PHD-finger
          Length = 600

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 339 ETSPFFNSDTNICSNPELLIFPFPLEYKLNQSC 241
           + SP  NS + +CSNP L   P      +N+SC
Sbjct: 399 QQSPLTNSSSGLCSNPSL---PEDESNNVNKSC 428


>At3g52330.1 68416.m05751 F-box family protein-related contains weak
           hit to TIGRFAM TIGR01640 : F-box protein interaction
           domain;  similar to F-box protein family, AtFBX8
           (GI:20197464) [Arabidopsis thaliana]
          Length = 307

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 154 GHDGVHKRIFLVSFLWRY 101
           GHD VH    ++SF+WR+
Sbjct: 144 GHDPVHDEYKVLSFIWRH 161


>At1g12160.1 68414.m01408 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase FMO2 from Homo sapiens
           [SP|Q99518]; contains Pfam profile PF00743
           Flavin-binding monooxygenase-like
          Length = 468

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 116 RNEENAFMDAIMATSVMRHLMNFLKEKGYVTPDPRQQRDFVKQLW 250
           RN +  F DAI+  +  ++   FLK  GYVT +  +     K ++
Sbjct: 266 RNGKVVFADAIVHCTGYKYHFPFLKTSGYVTVEDNRVGPLYKHVF 310


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,010,102
Number of Sequences: 28952
Number of extensions: 251821
Number of successful extensions: 677
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)