Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H01f
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi...    75   5e-15
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    40   3e-04
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    35   0.008
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    32   0.042
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.51 
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    28   0.68 
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    28   0.90 
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|...    27   1.2  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    26   3.6  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    25   4.8  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   6.3  

>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
           Pin1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 175

 Score = 75.4 bits (177), Expect = 5e-15
 Identities = 48/142 (33%), Positives = 64/142 (45%), Gaps = 9/142 (6%)
 Frame = +3

Query: 93  LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGP---------ASXXXXXXXXXXGGIPK 245
           LP+ W  + SRS    Y+ N  T +S WE P            A+               
Sbjct: 6   LPKPWIVKISRSRNRPYFFNTETHESLWEPPAATDMAALKKFIANELQESVTPTEASNSP 65

Query: 246 EVRCSHLLVKHSGSRRPSSWREEHITRTKEEALDILXEYRRKIIDXEAXF*RAGKYIF*L 425
           ++R SHLLVKH  SRRPSSW+EEHITR+KEEA  +   Y + +                 
Sbjct: 66  KIRASHLLVKHRESRRPSSWKEEHITRSKEEARKLAEHYEQLLKSGSVSMHDLAMKESDC 125

Query: 426 VISKT*WGIWGRFKKGQMQKPF 491
             ++   G  G F + +MQKPF
Sbjct: 126 SSARR-GGELGEFGRDEMQKPF 146


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
 Frame = +3

Query: 21  RKRKNLLAFPAQRTNDMASTQEEI--LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
           R+  N  A      + M+S +++   LP GWE R++ S G TYY++ +T+ + W +P
Sbjct: 212 RQTNNTSALSNSNAHIMSSFEDQYGRLPPGWE-RRADSLGRTYYVDHNTRTTTWTRP 267


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 34.7 bits (76), Expect = 0.008
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 93  LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGPAS 200
           LP GWE R + +T   Y+++ +TK + W+ P  P+S
Sbjct: 347 LPSGWEMRLT-NTARVYFVDHNTKTTTWDDPRLPSS 381


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 32.3 bits (70), Expect = 0.042
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 93  LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
           LP GW   K+ S G+ YY N   KKS +++P
Sbjct: 5   LPPGWTEHKAPS-GIPYYWNAELKKSTYQRP 34


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 87  EILPEGWEARKSRSTGMTYYLNKHTK--KSQWEKP 185
           E LP GW A+     G  +Y+N+  +  + QWE P
Sbjct: 8   EGLPSGWVAQWDAEYGTYFYVNESAQNPQPQWEPP 42


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 105 WEARKSRSTGMTYYLNKHTKKSQWEKP 185
           W   K+  + + YY N  T+KS WEKP
Sbjct: 36  WHEVKTEDSRV-YYYNSVTRKSVWEKP 61


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 69  MASTQEEILPEGWEARKSRSTGMTYYLNKHTKKS--QWEKP 185
           MA    E LP GW A+        +Y+N+   K+  QWE P
Sbjct: 1   MAYQTREGLPNGWVAQWDERYKCYFYVNESDPKAKPQWECP 41


>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 307 VKSILHVLRRKLLIYYXSIAVKSLTEKLNFEELASTYSDWSSAKR 441
           VKS   ++R+  L    + +V S+ E  +F ELA T+ DW    R
Sbjct: 10  VKSYTRLVRQGFLSQQRNHSV-SVNEVDHFNELAKTWWDWDGGSR 53


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 3   NFLLQLRKRKNLLAFPAQRTNDMASTQEEILPE 101
           N LL+ +KR +   F  QR+   AST +  L E
Sbjct: 151 NILLENKKRVSFYPFSVQRSQKFASTLKMCLEE 183


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 8/33 (24%), Positives = 22/33 (66%)
 Frame = -2

Query: 494 SKWFLHLTFLETTPNXPSRFADDQSEYVLASSS 396
           SKW+ ++ +L  T N P  F ++ + +++++++
Sbjct: 96  SKWYGYIEYLPKTFNTPLYFNENDNAFLISTNA 128


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 237 IPKEVRCSHLLVKHSGS 287
           IP  + C HL+V H G+
Sbjct: 120 IPASIHCDHLIVGHRGA 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,751
Number of Sequences: 5004
Number of extensions: 34462
Number of successful extensions: 109
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)