Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310H01f
(498 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916 54 6e-08
01_06_1796 - 39932487-39932633,39933150-39933201,39933370-399334... 42 2e-04
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 37 0.008
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 33 0.17
12_01_0794 + 7285100-7285369,7285931-7286338 32 0.22
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 32 0.22
11_03_0142 + 10675764-10675991,10676533-10676943 32 0.29
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070... 32 0.29
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 31 0.51
05_01_0534 - 4601844-4602297,4602689-4602847,4602947-4603514,460... 31 0.68
01_07_0218 + 42073425-42073561,42073714-42073743,42073957-420741... 27 6.3
09_04_0532 + 18386593-18386722,18386826-18386900,18387098-183875... 27 8.4
>04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916
Length = 234
Score = 54.0 bits (124), Expect = 6e-08
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Frame = +3
Query: 231 GGIPKEVRCSHLLVKHSGSRRPSSWREEH----ITRTKEEALDILXEYRRKIIDXEAXF* 398
GG K++R SH+L+KH GSRR +SWR+ T+++A D+ R KI+ E F
Sbjct: 116 GGGEKKLRASHILIKHEGSRRKASWRDPEGVAISATTRDDAADLARALREKIVAGERKFE 175
Query: 399 RAGKYIF*LVISKT*WGIWGRFKKGQMQKPF 491
+K G G F++G+MQK F
Sbjct: 176 DVATEESDCNSAKR-GGDLGPFERGKMQKAF 205
>01_06_1796 -
39932487-39932633,39933150-39933201,39933370-39933495,
39933645-39933743,39934039-39934258,39934599-39934764,
39935108-39935161,39935527-39935657,39935747-39935818,
39936524-39936602,39936705-39936783,39936868-39936902,
39936986-39937111
Length = 461
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +3
Query: 93 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
LPE WE +STG YY N +T+ +QWE P
Sbjct: 235 LPENWEEALDQSTGQKYYYNTNTQATQWEPP 265
Score = 41.1 bits (92), Expect = 5e-04
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 93 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGP 194
LP GW K ++G +Y+ N+ T +QW++PG P
Sbjct: 188 LPPGWVEAKDPTSGASYFYNQSTGTTQWDRPGAP 221
>01_03_0256 +
14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 37.1 bits (82), Expect = 0.008
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 93 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
LP GWE R TG ++Y++ +T+ + WE P
Sbjct: 526 LPPGWEERFDSVTGKSFYIDHNTRTTTWEHP 556
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 32.7 bits (71), Expect = 0.17
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 105 WEARKSRSTGMTYYLNKHTKKSQWEKP 185
W+ S + G YY NK T++S WEKP
Sbjct: 111 WQEHTS-ADGKKYYYNKKTRQSSWEKP 136
>12_01_0794 + 7285100-7285369,7285931-7286338
Length = 225
Score = 32.3 bits (70), Expect = 0.22
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 93 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
LP WE +G YYLN+ T K W +P
Sbjct: 79 LPLDWEQCLDLQSGRMYYLNRKTLKKSWIRP 109
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 32.3 bits (70), Expect = 0.22
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 93 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGP 194
LP+ W +TG YY N T +Q+EKP P
Sbjct: 19 LPKPWRGLVDGTTGYLYYWNPETNITQYEKPLPP 52
>11_03_0142 + 10675764-10675991,10676533-10676943
Length = 212
Score = 31.9 bits (69), Expect = 0.29
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 93 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
LP WE +G YYLN+ T + W +P
Sbjct: 65 LPMDWEQCLDLHSGRMYYLNRKTMRKSWVRP 95
>02_05_0877 + 32403363-32404662,32406545-32406630,32406709-32407077,
32407174-32407257,32407362-32407784,32408368-32408434,
32409238-32409430,32409577-32409680,32409787-32409990,
32410174-32410427,32410511-32410735,32410812-32411033,
32411109-32411162,32411337-32411402,32411496-32411633,
32411979-32412032,32412334-32412393,32412975-32413340,
32413415-32413582
Length = 1478
Score = 31.9 bits (69), Expect = 0.29
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 21 RKRKNLLAFPAQ--RTNDMASTQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGG 191
+ +KN F + T+D ASTQ + LP+G+ S N++T+ + ++PGG
Sbjct: 1420 KDKKNRETFQKELFMTSDQASTQNQRLPKGYAYVPRDSLSKDKLRNRNTQAHEPQEPGG 1478
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 31.1 bits (67), Expect = 0.51
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 93 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGP 194
LP+ W +TG Y+ N TK Q+++P P
Sbjct: 23 LPKPWRGLIDGNTGYLYFWNPETKAVQYDRPTAP 56
>05_01_0534 -
4601844-4602297,4602689-4602847,4602947-4603514,
4604853-4605246
Length = 524
Score = 30.7 bits (66), Expect = 0.68
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = -1
Query: 162 LYAY*DSMSFLYFYSCELPILQEEFLLE*KPCRWCVVPGTP 40
L A+ DS F + +P LQ LL +P RW VPGTP
Sbjct: 387 LAAHTDSGFFTFILQSPVPGLQ---LLRHRPDRWVTVPGTP 424
>01_07_0218 +
42073425-42073561,42073714-42073743,42073957-42074137,
42074742-42074806,42075374-42075545,42076570-42076769,
42076872-42076944,42077150-42077401
Length = 369
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 15 QLRKRKNLLAFPAQRTNDMASTQEEILPEGWE 110
QLR+R P +R AS Q ++ +GWE
Sbjct: 54 QLRERHQTRVVPRRRREGPASVQGQVKVKGWE 85
>09_04_0532 +
18386593-18386722,18386826-18386900,18387098-18387510,
18387682-18387688,18387944-18388005,18388046-18388341,
18388456-18388813,18388916-18389491,18389956-18390231
Length = 730
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 54 QRTNDMASTQEEILPEGWEARKSRSTGMTYYLNKHTKK 167
+ TN +A + LP+G R T YY N + KK
Sbjct: 373 KETNYLAQVAAKSLPKGLHCLPLRLTNEYYYTNSNNKK 410
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,895,940
Number of Sequences: 37544
Number of extensions: 233108
Number of successful extensions: 591
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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