Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310H01f
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0)                     42   4e-04
SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.003
SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16)                    36   0.014
SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)                     33   0.13 
SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)                     33   0.13 
SB_52413| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.40 
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.40 
SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.53 
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.53 
SB_44622| Best HMM Match : dsrm (HMM E-Value=3.1e-16)                  30   0.92 
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)                     30   0.92 
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.92 
SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07)                 29   1.6  
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.1  
SB_17543| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)                27   6.5  
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_23995| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-05)              27   8.6  

>SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0)
          Length = 709

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = +3

Query: 84  EEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
           E  LPEGW   KSR  G  YY N  T +S+W+ P
Sbjct: 80  EANLPEGWIISKSRQHGRMYYFNTETAESRWQHP 113


>SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 14/31 (45%), Positives = 23/31 (74%)
 Frame = +3

Query: 93  LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
           LP GWE R++ S G TYY++ +T+ + W++P
Sbjct: 415 LPHGWE-RRTDSRGRTYYVDHNTRTTTWQRP 444



 Score = 33.9 bits (74), Expect = 0.075
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 84  EEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
           EE LP GWE R     G  YY++ +++ + WE+P
Sbjct: 380 EEPLPPGWEQRVDPH-GRIYYVDHNSRTTAWERP 412


>SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 22/92 (23%), Positives = 41/92 (44%)
 Frame = +3

Query: 72  ASTQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGPASXXXXXXXXXXGGIPKEV 251
           ++ Q   LPEGWE R+  + G T+Y++  T+ + W +P   ++          G      
Sbjct: 177 SAEQPPPLPEGWEERQD-ANGRTFYIDHTTRTTTWVRPSSESTYQRELQREESGRARSFQ 235

Query: 252 RCSHLLVKHSGSRRPSSWREEHITRTKEEALD 347
              HL V  +   + SS  +  I+  + + +D
Sbjct: 236 IRRHLSVDEADDSQRSSTGDMEISELRVKNID 267


>SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16)
          Length = 678

 Score = 36.3 bits (80), Expect = 0.014
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 81  QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
           +E   P GW     R     +Y N  TKKSQWE P
Sbjct: 415 EESASPPGWSCHWDRKYKQYFYTNLETKKSQWEFP 449



 Score = 32.7 bits (71), Expect = 0.17
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +3

Query: 45  FPAQRTNDMASTQEEILPEG---WEARKSRSTGMTYYLNKHTKKSQWEKPGG 191
           F  ++ ND    +E +  +    W+A +  ++   YY N+ T + QWE P G
Sbjct: 92  FQQEQDNDKEHDEEPMEEDPNYPWQACRDEASNCYYYWNQETNEVQWEMPPG 143


>SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)
          Length = 893

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 93  LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
           LP GWE    ++TG  +Y + +T+ + W  P
Sbjct: 489 LPHGWEKAVDQTTGRIFYRDHNTQTTHWNPP 519


>SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)
          Length = 662

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 105 WEARKSRSTGMTYYLNKHTKKSQWEKP 185
           W   K+ S G TYY N  T++S WEKP
Sbjct: 87  WLEHKT-SDGKTYYYNARTRESAWEKP 112



 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 105 WEARKSRSTGMTYYLNKHTKKSQWEKP 185
           W   ++ S G  Y+ N  T +S WE+P
Sbjct: 419 WSEHRT-SDGRVYFYNSRTMQSTWERP 444


>SB_52413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 838

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 75  STQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
           S+Q+   P+GWE  +S   G+ YY+N  T  SQ E P
Sbjct: 358 SSQQTESPDGWEQVESPQYGI-YYVNHATGSSQREHP 393


>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 826

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 81  QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
           Q+  LP GWE     ++G  ++++ +T+ + W  P
Sbjct: 4   QQHPLPNGWEMTVDPNSGRPFFIDHNTRTTTWTDP 38


>SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1668

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 93  LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
           LP GWE  +    G  YY++ ++ ++ W  P
Sbjct: 11  LPVGWEEARDTRDGRVYYIDHYSHRTTWIDP 41


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 78   TQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
            + E  LP+GW   +S  TG  YY +  +  +QWE+P
Sbjct: 1273 SNEYELPDGWMEVES-GTGSKYYWHVSSGTTQWERP 1307


>SB_44622| Best HMM Match : dsrm (HMM E-Value=3.1e-16)
          Length = 724

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 93  LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
           LP+GW A   RS G+  YL++ T+   W +P
Sbjct: 52  LPDGWLALNHRSGGI-IYLHRPTRVCTWSRP 81


>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
          Length = 693

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 54  QRTNDMASTQEEILPE-GWEARKSRSTGMTYYLNKHTKKSQWEKP 185
           Q+ +++ +  E IL    W+  K+ S G  YY N  TK+S W +P
Sbjct: 194 QKPDELKTPSEIILDSFPWKEHKADS-GRVYYHNTETKESIWTEP 237



 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 105 WEARKSRSTGMTYYLNKHTKKSQWEKP 185
           W   K+   G TY+ N  +K S W+KP
Sbjct: 171 WTEHKAPD-GRTYFYNNDSKVSTWQKP 196


>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 84  EEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
           ++ LP GWE       G TYY++   KK+Q+E P
Sbjct: 327 DDELPYGWEKVDDPKYG-TYYIDHINKKTQFENP 359


>SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07)
          Length = 534

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 18  LRKRKNLLAFPAQRTNDMASTQEEILPEGWEARKSRST 131
           LR++++LLA    R  +MAST +E L   W+ +   ST
Sbjct: 200 LREKEDLLAEEQYRKEEMASTTDEDLLRIWDEKPVTST 237


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 337  SSLVRVICSSRHEDGRRLPLCFTSKWLHLTSLGI 236
            S + R IC   H+DG  +     S W H+  +GI
Sbjct: 1258 SGITRCICGYNHDDGYMICCDKCSVWQHIECMGI 1291


>SB_17543| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)
          Length = 229

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +2

Query: 263 LACKTQWKPPTILMA*RAXXXXXXXXXXXITRVSP*NH*XRSXILKSWQVHILI 424
           L CKT   P T L A R            +  +SP +H  R+ ILK+ Q+++ I
Sbjct: 177 LTCKTCTSPVTALHARRVLHLSPPLHARRVLSLSPPSHARRAIILKT-QIYMYI 229


>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1047

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 72  ASTQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
           A  +   LP  W+       G  YY +  T+++QW+ P
Sbjct: 841 AKVKPRALPPNWKTATDPQ-GKIYYYHTLTRRTQWDPP 877


>SB_23995| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-05)
          Length = 96

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 358 SXNISRASSLVRVICSSRHEDGRRLPLCFT 269
           S  +S ++SLV  IC   ++D +RLP   T
Sbjct: 11  SDELSGSNSLVCPICEEEYDDPKRLPCMHT 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,646,217
Number of Sequences: 59808
Number of extensions: 248098
Number of successful extensions: 683
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)