Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310H01f
(498 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18040.1 68415.m02097 peptidyl-prolyl cis-trans isomerase (PI... 58 3e-09
At2g41020.2 68415.m05066 WW domain-containing protein contains P... 42 2e-04
At2g41020.1 68415.m05067 WW domain-containing protein contains P... 42 2e-04
At3g59770.1 68416.m06670 sacI homology domain-containing protein... 39 0.002
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 37 0.007
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai... 33 0.14
At1g14390.1 68414.m01706 leucine-rich repeat transmembrane prote... 32 0.19
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 31 0.43
At3g13225.1 68416.m01660 WW domain-containing protein contains P... 31 0.43
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 31 0.43
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 31 0.43
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 31 0.43
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 31 0.43
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 31 0.57
At1g05120.1 68414.m00514 SNF2 domain-containing protein / helica... 28 3.0
At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai... 27 5.3
At4g32150.1 68417.m04573 synaptobrevin family protein similar to... 27 7.0
At4g11745.1 68417.m01873 kelch repeat-containing protein similar... 27 7.0
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 27 9.3
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 27 9.3
>At2g18040.1 68415.m02097 peptidyl-prolyl cis-trans isomerase (PIN1)
/ cyclophilin / rotamase identical to Chain A, Solution
Structure Of Pin1at From Arabidopsis Thaliana
GI:22218833; contains Pfam profile PF00639: PPIC-type
PPIASE domain
Length = 119
Score = 58.0 bits (134), Expect = 3e-09
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Frame = +3
Query: 246 EVRCSHLLVKHSGSRRPSSWREEH----ITRTKEEALDILXEYRRKIIDXEAXF*RAGKY 413
+V+ SH+L+KH GSRR +SW++ +T T+E A++ L R I+ +A F
Sbjct: 6 QVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATR 65
Query: 414 IF*LVISKT*WGIWGRFKKGQMQKPF 491
+ +K G G F +GQMQKPF
Sbjct: 66 VSDCSSAKR-GGDLGSFGRGQMQKPF 90
>At2g41020.2 68415.m05066 WW domain-containing protein contains Pfam
domain PF00397: WW domain
Length = 382
Score = 41.9 bits (94), Expect = 2e-04
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +3
Query: 93 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
LP GW K ++G TYY N+HT QWE+P
Sbjct: 194 LPLGWVDAKDPASGATYYYNQHTGTCQWERP 224
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 48 PAQRTNDMASTQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
P + + +S + E W ++G Y+ N T SQWE P
Sbjct: 224 PVELSYATSSAPPVLSKEEWIETFDEASGHKYFYNTRTHVSQWEPP 269
>At2g41020.1 68415.m05067 WW domain-containing protein contains Pfam
domain PF00397: WW domain
Length = 463
Score = 41.9 bits (94), Expect = 2e-04
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +3
Query: 93 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
LP GW K ++G TYY N+HT QWE+P
Sbjct: 194 LPLGWVDAKDPASGATYYYNQHTGTCQWERP 224
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 48 PAQRTNDMASTQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
P + + +S + E W ++G Y+ N T SQWE P
Sbjct: 224 PVELSYATSSAPPVLSKEEWIETFDEASGHKYFYNTRTHVSQWEPP 269
>At3g59770.1 68416.m06670 sacI homology domain-containing protein /
WW domain-containing protein contains Pfam profiles
PF00397: WW domain, PF02383: SacI homology domain;
identical to cDNA SAC domain protein 9 (SAC9)
GI:31415734
Length = 1630
Score = 38.7 bits (86), Expect = 0.002
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 93 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
LP GWE R TG +YY++ +TK + W P
Sbjct: 510 LPPGWEKRADAVTGKSYYIDHNTKTTTWSHP 540
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 37.1 bits (82), Expect = 0.007
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 81 QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGP 194
++ LP+ W+ STG+ YY N T +Q+E+P P
Sbjct: 18 EDPTLPQPWKGLIDGSTGILYYWNPETNVTQYERPSAP 55
>At3g19670.1 68416.m02492 FF domain-containing protein / WW
domain-containing protein weak similarity to
huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
GI:3341980; contains Pfam profiles PF01846: FF domain,
PF00397: WW domain
Length = 960
Score = 32.7 bits (71), Expect = 0.14
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 132 GMTYYLNKHTKKSQWEKP 185
G Y+ NK TKKS WEKP
Sbjct: 217 GRKYFFNKRTKKSTWEKP 234
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 105 WEARKSRSTGMTYYLNKHTKKSQWEKP 185
W+ S G YY NK TK+S W P
Sbjct: 250 WKEHSSPD-GRKYYYNKITKQSTWTMP 275
>At1g14390.1 68414.m01706 leucine-rich repeat transmembrane protein
kinase, putative similar to putative receptor-like
protein kinase GI:2947063 from [Arabidopsis thaliana]
Length = 747
Score = 32.3 bits (70), Expect = 0.19
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = -3
Query: 409 LPALQNXASXSMILRRYSXNISRASSLVRVICSSRHEDGRRLPLCFTSK 263
LP+LQN + +L N S +S +R++ SR+ +LP CF+SK
Sbjct: 248 LPSLQNLSLAQNLLSGSLPNSSLCNSKLRILDVSRNLLTGKLPSCFSSK 296
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 31.1 bits (67), Expect = 0.43
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 99 EGWEARKSRSTGMTYYLNKHTKKSQWEKPGG 191
+ W A KS + G+ YY N T +S +EKP G
Sbjct: 157 DAWTAHKSEA-GVLYYYNSVTGQSTYEKPPG 186
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 90 ILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
ILP A S + G YY N TK S W+ P
Sbjct: 203 ILPGTDWALVSTNDGKKYYYNNKTKVSSWQIP 234
>At3g13225.1 68416.m01660 WW domain-containing protein contains Pfam
profile PF00397: WW domain
Length = 863
Score = 31.1 bits (67), Expect = 0.43
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 93 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
LP W+A ST YY N T ++ W +P
Sbjct: 831 LPSEWQAYWDESTKKVYYGNTSTSQTSWTRP 861
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 31.1 bits (67), Expect = 0.43
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 81 QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
++ LP+ W+ TG Y+ N T +Q+EKP
Sbjct: 15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKP 49
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 31.1 bits (67), Expect = 0.43
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 81 QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
++ LP+ W+ TG Y+ N T +Q+EKP
Sbjct: 15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKP 49
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 31.1 bits (67), Expect = 0.43
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 81 QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 185
++ LP+ W+ TG Y+ N T +Q+EKP
Sbjct: 15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKP 49
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles
PF01846: FF domain, PF00397: WW domain
Length = 946
Score = 31.1 bits (67), Expect = 0.43
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 141 YYLNKHTKKSQWEKP 185
YY NK TK+S WEKP
Sbjct: 213 YYYNKRTKQSNWEKP 227
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 30.7 bits (66), Expect = 0.57
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 93 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGPA 197
LP+ W+ TG Y+ N T +Q+E+P A
Sbjct: 17 LPKPWKGLVDSRTGYLYFWNPETNVTQYERPASSA 51
>At1g05120.1 68414.m00514 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P79051 DNA
repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 833
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +1
Query: 337 KLLIYYXSIAVKSLTEKLNFEELASTYSDWSSAKRDGXFGVVSRKVKC 480
K+L+Y+ + K++ E +N++ + +TYS S R ++ KV+C
Sbjct: 222 KVLVYHGAKRAKNIKEFMNYDFVLTTYSTVESEYRR---NIMPSKVQC 266
>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
Pfam profile: PF00628: PHD-finger
Length = 704
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 331 LVRVICSSRHEDGRRLPLCFTSK-WLHLTSLGI 236
+V+ IC +R +DG R+ C + W H GI
Sbjct: 606 MVKCICRARDDDGERMISCDVCEVWQHTRCCGI 638
>At4g32150.1 68417.m04573 synaptobrevin family protein similar to
Synaptobrevin-like protein 1 (SP:P51809) [Homo sapiens]
Length = 219
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -3
Query: 394 NXASXSMILRRYSXNISRASSLVRVICSSRHEDGRRLPLCF 272
N ++ S RY ++ R L V+C + GRR+P F
Sbjct: 40 NDSNVSYSQDRYVFHVKRTDGLT-VLCMAEETAGRRIPFAF 79
>At4g11745.1 68417.m01873 kelch repeat-containing protein similar to
SKP1 interacting partner 6 [Arabidopsis thaliana]
GI:10716957; contains Pfam profile PF01344: Kelch motif
Length = 284
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/58 (20%), Positives = 24/58 (41%)
Frame = +3
Query: 141 YYLNKHTKKSQWEKPGGPASXXXXXXXXXXGGIPKEVRCSHLLVKHSGSRRPSSWREE 314
YY N+H++ +W P G + +P+ + H+ + G + W +E
Sbjct: 171 YYYNRHSRLLEWYDPEGSSWGILNGLEELLPKLPRVLVSRHVRLVDYGGKVAIFWEKE 228
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 132 GMTYYLNKHTKKSQWEKP 185
G YY N T +S+WEKP
Sbjct: 605 GFKYYYNGLTGESKWEKP 622
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 132 GMTYYLNKHTKKSQWEKP 185
G YY N T +S+WEKP
Sbjct: 363 GFKYYYNGLTGESKWEKP 380
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,313,295
Number of Sequences: 28952
Number of extensions: 185774
Number of successful extensions: 476
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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